Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC73_RS05760 Genome accession   NZ_CP053998
Coordinates   1186815..1188083 (+) Length   422 a.a.
NCBI ID   WP_004181942.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1181815..1193083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS05730 (FOC73_05730) - 1182142..1182579 (-) 438 WP_004181975.1 LytTR family DNA-binding domain-containing protein -
  FOC73_RS05735 (FOC73_05735) - 1182758..1183063 (+) 306 WP_004181965.1 hypothetical protein -
  FOC73_RS05740 (FOC73_05740) mutL 1183113..1185056 (+) 1944 WP_004181935.1 DNA mismatch repair endonuclease MutL -
  FOC73_RS05745 (FOC73_05745) - 1185187..1185408 (+) 222 WP_002886321.1 hypothetical protein -
  FOC73_RS05750 (FOC73_05750) ruvA 1185565..1186155 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  FOC73_RS05755 (FOC73_05755) - 1186164..1186718 (+) 555 WP_004181971.1 DNA-3-methyladenine glycosylase I -
  FOC73_RS05760 (FOC73_05760) cinA 1186815..1188083 (+) 1269 WP_004181942.1 competence/damage-inducible protein A Machinery gene
  FOC73_RS05765 (FOC73_05765) recA 1188119..1189258 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  FOC73_RS05770 (FOC73_05770) spx 1189427..1189825 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45748.95 Da        Isoelectric Point: 5.1933

>NTDB_id=449950 FOC73_RS05760 WP_004181942.1 1186815..1188083(+) (cinA) [Streptococcus salivarius strain FDAARGOS_771]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQEVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTILKEFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LGIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDII

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449950 FOC73_RS05760 WP_004181942.1 1186815..1188083(+) (cinA) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGATAATGAAAACCGCCTACTTTCAGTTCTTG
ATCAGGCTAGTCAACGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACTTAACCAAGCAAACA
CTGGCTAAATTTTTAGGAAAAGAACTTGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGAGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGAGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTAGTGACTATTCTGAAAGAGTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGCACCATGGCAAGACCATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTTAAAGGTGGCTTTGTTACTTACAGCATTGAAGAAAAAGCTAAAATG
TTGGGTATTCCTTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCCTTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.94

99.289

0.744
  cinA Streptococcus mitis NCTC 12261

74.224

99.289

0.737
  cinA Streptococcus pneumoniae TIGR4

73.508

99.289

0.73
  cinA Streptococcus pneumoniae Rx1

73.27

99.289

0.727
  cinA Streptococcus pneumoniae R6

73.27

99.289

0.727
  cinA Streptococcus pneumoniae D39

73.031

99.289

0.725
  cinA Streptococcus mutans UA159

71.703

98.815

0.709
  cinA Streptococcus suis isolate S10

54.567

98.578

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

45.131

99.763

0.45