Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC76_RS13390 Genome accession   NZ_CP053955
Coordinates   2577060..2578298 (+) Length   412 a.a.
NCBI ID   WP_000990724.1    Uniprot ID   -
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2572060..2583298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS13360 (FOC76_13360) - 2572112..2573398 (+) 1287 WP_000411945.1 pitrilysin family protein -
  FOC76_RS13365 (FOC76_13365) - 2573502..2574215 (+) 714 WP_000759590.1 SDR family oxidoreductase -
  FOC76_RS13370 (FOC76_13370) - 2574291..2574539 (+) 249 WP_000114448.1 DUF3243 domain-containing protein -
  FOC76_RS13375 (FOC76_13375) - 2574679..2575464 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  FOC76_RS13380 (FOC76_13380) - 2575486..2576397 (+) 912 WP_000137477.1 helix-turn-helix domain-containing protein -
  FOC76_RS13385 (FOC76_13385) pgsA 2576461..2577039 (+) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC76_RS13390 (FOC76_13390) cinA 2577060..2578298 (+) 1239 WP_000990724.1 competence/damage-inducible protein CinA Machinery gene
  FOC76_RS13395 (FOC76_13395) recA 2578443..2579474 (+) 1032 WP_001283861.1 recombinase RecA Machinery gene
  FOC76_RS13400 (FOC76_13400) rny 2579956..2581518 (+) 1563 WP_000204911.1 ribonuclease Y -
  FOC76_RS13405 (FOC76_13405) - 2581681..2582475 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  FOC76_RS13410 (FOC76_13410) spoVS 2582624..2582884 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45470.75 Da        Isoelectric Point: 5.2113

>NTDB_id=449445 FOC76_RS13390 WP_000990724.1 2577060..2578298(+) (cinA) [Bacillus tropicus strain FDAARGOS_782]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNTHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=449445 FOC76_RS13390 WP_000990724.1 2577060..2578298(+) (cinA) [Bacillus tropicus strain FDAARGOS_782]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGTCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTACATCTTATTACCAGGGCCGCCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATACTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCGGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379