Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC88_RS07530 Genome accession   NZ_CP053934
Coordinates   1327109..1328347 (+) Length   412 a.a.
NCBI ID   WP_042510901.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1322109..1333347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS07500 (FOC88_07500) - 1322161..1323447 (+) 1287 WP_000411952.1 pitrilysin family protein -
  FOC88_RS07505 (FOC88_07505) - 1323551..1324264 (+) 714 WP_000759617.1 SDR family oxidoreductase -
  FOC88_RS07510 (FOC88_07510) - 1324340..1324588 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  FOC88_RS07515 (FOC88_07515) - 1324728..1325513 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  FOC88_RS07520 (FOC88_07520) - 1325535..1326446 (+) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  FOC88_RS07525 (FOC88_07525) pgsA 1326510..1327088 (+) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC88_RS07530 (FOC88_07530) cinA 1327109..1328347 (+) 1239 WP_042510901.1 competence/damage-inducible protein CinA Machinery gene
  FOC88_RS07535 (FOC88_07535) recA 1328493..1329101 (+) 609 Protein_1394 recombinase RecA -
  FOC88_RS07540 (FOC88_07540) - 1329429..1329851 (+) 423 Protein_1395 DNA recombination/repair protein RecA -
  FOC88_RS07545 (FOC88_07545) rny 1330334..1331896 (+) 1563 WP_000099773.1 ribonuclease Y -
  FOC88_RS07550 (FOC88_07550) - 1332062..1332856 (+) 795 WP_001221098.1 TIGR00282 family metallophosphoesterase -
  FOC88_RS07555 (FOC88_07555) spoVS 1333005..1333265 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45444.67 Da        Isoelectric Point: 4.8383

>NTDB_id=449157 FOC88_RS07530 WP_042510901.1 1327109..1328347(+) (cinA) [Bacillus thuringiensis strain FDAARGOS_794]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQELIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=449157 FOC88_RS07530 WP_042510901.1 1327109..1328347(+) (cinA) [Bacillus thuringiensis strain FDAARGOS_794]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGAGTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACGTGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.537

99.515

0.583
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379