Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STAVA1121_RS08380 Genome accession   NZ_CP065488
Coordinates   1596299..1596817 (-) Length   172 a.a.
NCBI ID   WP_347131230.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1591299..1601817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS08360 (STAVA1121_08250) - 1593208..1594152 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STAVA1121_RS08365 (STAVA1121_08255) - 1594223..1594894 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  STAVA1121_RS08370 (STAVA1121_08260) - 1595011..1595892 (+) 882 WP_347131229.1 DUF4300 family protein -
  STAVA1121_RS08375 (STAVA1121_08265) rpsR 1596018..1596257 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STAVA1121_RS08380 (STAVA1121_08270) ssb 1596299..1596817 (-) 519 WP_347131230.1 single-stranded DNA-binding protein Machinery gene
  STAVA1121_RS08385 (STAVA1121_08275) rpsF 1596829..1597119 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  STAVA1121_RS08390 (STAVA1121_08280) - 1597338..1598291 (+) 954 WP_002951907.1 hypothetical protein -
  STAVA1121_RS08395 (STAVA1121_08285) mutY 1599207..1600358 (+) 1152 WP_347131232.1 A/G-specific adenine glycosylase -
  STAVA1121_RS08400 (STAVA1121_08290) - 1600687..1600938 (-) 252 WP_347131233.1 hypothetical protein -
  STAVA1121_RS08405 (STAVA1121_08295) - 1601041..1601268 (-) 228 WP_087010175.1 hypothetical protein -
  STAVA1121_RS08410 (STAVA1121_08300) - 1601255..1601716 (-) 462 WP_347131234.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18694.44 Da        Isoelectric Point: 4.7482

>NTDB_id=448569 STAVA1121_RS08380 WP_347131230.1 1596299..1596817(-) (ssb) [Streptococcus thermophilus strain AVA1121]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRIYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=448569 STAVA1121_RS08380 WP_347131230.1 1596299..1596817(-) (ssb) [Streptococcus thermophilus strain AVA1121]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCTGTTGC
AACATTTAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTATTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366