Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CURT_RS08820 Genome accession   NZ_CP053832
Coordinates   1722567..1722818 (-) Length   83 a.a.
NCBI ID   WP_018713931.1    Uniprot ID   A0AAU8UCA5
Organism   Campylobacter ureolyticus strain LMG 6451     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717567..1727818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CURT_RS09630 (CURT_1709) - 1717626..1717982 (-) 357 WP_018713926.1 sigma factor-like helix-turn-helix DNA-binding protein -
  CURT_RS08800 (CURT_1711) murD 1718186..1719391 (-) 1206 WP_018713927.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  CURT_RS08805 (CURT_1712) mraY 1719396..1720460 (-) 1065 WP_018713928.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  CURT_RS08810 (CURT_1713) gpmI 1720546..1722009 (+) 1464 WP_018713929.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CURT_RS08815 (CURT_1714) - 1722028..1722351 (+) 324 WP_018713930.1 hypothetical protein -
  CURT_RS08820 (CURT_1715) Cj0011c 1722567..1722818 (-) 252 WP_018713931.1 helix-hairpin-helix domain-containing protein Machinery gene
  CURT_RS08825 - 1723480..1723704 (-) 225 WP_143297708.1 hypothetical protein -
  CURT_RS09635 - 1723867..1723998 (+) 132 WP_408609400.1 type II toxin-antitoxin system RelE family toxin -
  CURT_RS08835 (CURT_1716) - 1724167..1725189 (+) 1023 WP_018713961.1 IS1595 family transposase -
  CURT_RS08840 (CURT_1717) - 1725201..1726025 (+) 825 WP_018713960.1 hypothetical protein -
  CURT_RS08845 (CURT_1718) - 1726025..1727107 (+) 1083 WP_115651837.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 9469.10 Da        Isoelectric Point: 9.5698

>NTDB_id=448018 CURT_RS08820 WP_018713931.1 1722567..1722818(-) (Cj0011c) [Campylobacter ureolyticus strain LMG 6451]
MKRLLLLFVFSFSLLFGAVNINTASKEELMTLKGIGEATAEAIIEYRKENKFTKIEDIKNVKGIGDKKFESIKEDIEVKD
NKK

Nucleotide


Download         Length: 252 bp        

>NTDB_id=448018 CURT_RS08820 WP_018713931.1 1722567..1722818(-) (Cj0011c) [Campylobacter ureolyticus strain LMG 6451]
ATGAAAAGACTATTGTTATTATTTGTTTTTAGTTTTAGTTTGTTGTTTGGTGCTGTAAATATAAACACTGCTTCCAAGGA
AGAACTTATGACTCTTAAGGGTATTGGAGAGGCTACAGCAGAAGCTATAATAGAATATAGAAAAGAGAATAAATTTACAA
AAATAGAAGATATTAAAAATGTAAAAGGCATAGGTGATAAGAAGTTTGAATCAATAAAAGAAGATATTGAAGTTAAGGAT
AATAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.103

93.976

0.602
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comEA Bacillus subtilis subsp. subtilis str. 168

59.677

74.699

0.446
  comEA Vibrio parahaemolyticus RIMD 2210633

43.902

98.795

0.434
  comEA Vibrio cholerae C6706

64

60.241

0.386
  comEA Vibrio cholerae strain A1552

64

60.241

0.386
  comEA Legionella pneumophila str. Paris

44.776

80.723

0.361
  comEA Legionella pneumophila strain ERS1305867

44.776

80.723

0.361