Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY05_RS17650 Genome accession   NZ_CP053811
Coordinates   805278..806372 (-) Length   364 a.a.
NCBI ID   WP_057555456.1    Uniprot ID   -
Organism   Vibrio cholerae strain W6G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 800278..811372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS17640 (HPY05_17790) - 802030..802695 (+) 666 WP_000268201.1 flagellar brake protein -
  HPY05_RS17645 (HPY05_17795) luxQ 802687..805260 (-) 2574 WP_069648671.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY05_RS17650 (HPY05_17800) luxP 805278..806372 (-) 1095 WP_057555456.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  HPY05_RS17655 (HPY05_17805) traF 806584..807744 (-) 1161 WP_071180527.1 conjugal transfer protein TraF -
  HPY05_RS17660 (HPY05_17810) - 807846..808151 (-) 306 WP_033932000.1 GIY-YIG nuclease family protein -
  HPY05_RS17665 (HPY05_17815) - 808151..808801 (-) 651 WP_175247258.1 YceH family protein -
  HPY05_RS17670 (HPY05_17820) - 808843..809040 (-) 198 WP_001246071.1 hypothetical protein -
  HPY05_RS17675 (HPY05_17825) - 809228..809548 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY05_RS17680 (HPY05_17830) - 809961..810212 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41255.94 Da        Isoelectric Point: 6.5074

>NTDB_id=447727 HPY05_RS17650 WP_057555456.1 805278..806372(-) (luxP) [Vibrio cholerae strain W6G]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQVHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447727 HPY05_RS17650 WP_057555456.1 805278..806372(-) (luxP) [Vibrio cholerae strain W6G]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGTACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCAGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACAGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984