Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/blpH   Type   Regulator
Locus tag   ST90729_RS07985 Genome accession   NZ_CP065480
Coordinates   1545197..1546000 (+) Length   267 a.a.
NCBI ID   WP_347116586.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   phosphorylation of ComE; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540197..1551000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS07960 (ST90729_07940) - 1541544..1541810 (-) 267 WP_211836860.1 Blp family class II bacteriocin -
  ST90729_RS07965 - 1542061..1542462 (-) 402 WP_011226490.1 hypothetical protein -
  ST90729_RS07970 (ST90729_07945) - 1542792..1542959 (-) 168 WP_011226492.1 hypothetical protein -
  ST90729_RS07975 (ST90729_07950) - 1543449..1543679 (-) 231 WP_011226494.1 bacteriocin class II family protein -
  ST90729_RS07980 (ST90729_07955) comE/blpR 1543929..1544660 (+) 732 WP_347116585.1 LytTR family DNA-binding domain-containing protein Regulator
  ST90729_RS07985 comD/blpH 1545197..1546000 (+) 804 WP_347116586.1 ATP-binding protein Regulator
  ST90729_RS07990 (ST90729_07965) - 1546018..1546179 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  ST90729_RS07995 (ST90729_07970) comB 1546194..1547561 (-) 1368 WP_347116587.1 bacteriocin secretion accessory protein Regulator
  ST90729_RS08000 (ST90729_07975) comA/nlmT 1547577..1549730 (-) 2154 WP_157769910.1 peptide cleavage/export ABC transporter Regulator

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30881.26 Da        Isoelectric Point: 4.8309

>NTDB_id=447725 ST90729_RS07985 WP_347116586.1 1545197..1546000(+) (comD/blpH) [Streptococcus thermophilus strain 90729]
MYLENTTHSSTLELRKLCVVISLVLFFIMIVFLERNIREMIQGQLDFQKNLQLENLYTYNKHIECLYNSVRSFRHDYSNL
LVTLRLGIDKDDMDIVKEVYDSVLQESDKRLNTRNFDLARLVNIQDNTLKSLLSAKVLQAEEEGIEVQISIPEPIHLIGM
EIMDFIIVTSIFLDNAIEGAIQTQNHKITISFWEDHRSQLLSISNTISEEQTETKTIFERGVSNKGRERGIGLANVTEIL
DNYINVNLETQSNNFSFTQQLTITKKA

Nucleotide


Download         Length: 804 bp        

>NTDB_id=447725 ST90729_RS07985 WP_347116586.1 1545197..1546000(+) (comD/blpH) [Streptococcus thermophilus strain 90729]
ATGTATCTTGAAAACACTACTCACTCTTCAACTTTGGAGCTTCGAAAACTCTGTGTTGTTATTTCACTTGTCCTCTTCTT
CATTATGATTGTCTTTTTAGAAAGAAACATTCGTGAAATGATTCAAGGACAATTGGACTTCCAGAAAAATCTCCAGCTAG
AGAATCTCTACACCTACAATAAACATATTGAATGTCTCTACAATTCTGTTCGTAGTTTTAGACACGATTATAGTAATCTC
TTAGTCACATTACGATTGGGGATAGATAAAGACGATATGGATATTGTCAAAGAAGTCTATGATAGTGTGCTTCAAGAATC
CGATAAACGATTAAATACAAGAAACTTTGACTTAGCTAGACTCGTTAATATTCAGGATAATACTTTGAAAAGCCTTCTGT
CCGCAAAAGTTTTACAAGCAGAAGAAGAAGGTATTGAAGTTCAGATTAGCATCCCAGAACCCATCCACTTGATTGGGATG
GAGATTATGGACTTCATTATCGTCACTTCTATTTTTTTAGATAACGCTATTGAAGGTGCCATTCAAACTCAAAACCATAA
AATTACTATTAGCTTTTGGGAAGATCATCGTTCACAGCTATTATCTATTAGCAATACCATAAGTGAAGAACAAACAGAAA
CTAAAACCATATTTGAAAGAGGTGTCTCCAACAAGGGACGAGAGCGAGGCATTGGCCTTGCTAATGTCACAGAAATCTTA
GATAACTATATCAATGTAAACTTAGAAACACAGAGTAACAATTTCTCATTCACACAACAATTAACAATAACTAAAAAGGC
CTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(160-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/blpH Streptococcus mutans UA159

38.189

95.131

0.363