Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY16_RS02320 Genome accession   NZ_CP053802
Coordinates   484293..485519 (-) Length   408 a.a.
NCBI ID   WP_175247953.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479293..490519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS02300 (HPY16_02300) yacG 481626..481823 (-) 198 WP_175247951.1 DNA gyrase inhibitor YacG -
  HPY16_RS02305 (HPY16_02305) zapD 481983..482723 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY16_RS02310 (HPY16_02310) coaE 482755..483363 (-) 609 WP_001913631.1 dephospho-CoA kinase -
  HPY16_RS02315 (HPY16_02315) pilD 483360..484235 (-) 876 WP_175247952.1 A24 family peptidase Machinery gene
  HPY16_RS02320 (HPY16_02320) pilC 484293..485519 (-) 1227 WP_175247953.1 type II secretion system F family protein Machinery gene
  HPY16_RS02325 (HPY16_02325) pilB 485562..487250 (-) 1689 WP_134987328.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY16_RS02330 (HPY16_02330) - 487251..487712 (-) 462 WP_162906052.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HPY16_RS02335 (HPY16_02335) nadC 487957..488847 (-) 891 WP_134987327.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY16_RS02340 (HPY16_02340) ampD 489143..489688 (+) 546 WP_001959072.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45115.39 Da        Isoelectric Point: 10.2922

>NTDB_id=447503 HPY16_RS02320 WP_175247953.1 484293..485519(-) (pilC) [Vibrio cholerae strain L6G]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYHDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=447503 HPY16_RS02320 WP_175247953.1 484293..485519(-) (pilC) [Vibrio cholerae strain L6G]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCCTAACCCATCGCGTGAAAAGCAAAGACATCACGATTTTGACTCGGCAGTTAGCGACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGTACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAAGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCCAAAGTGATTAAAGCGCTCATCTACCCCAGCATGGTTGTGTTGGTCGCGCTCGGGGTATC
TTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTACAGGCTTACAGTTTATGGGCATTTATCGCCATCGCCGCGGCCATTTTTGGC
CTGAAAGCGCTGCGTAAAAACTCCTTCCAGATCCGTTTGAAAACCAGTCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCAATTCTCGCCA
GTTTAAAAACCACGGCCAAAACCTCCGGCAATGTGCACTTTGAAACAGCGATTAATGAGGTGTACCACGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGAAGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACAGTCGATAACTTGG
GCAAGATTCTTGAGCCGCTGATCATCGTCTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.755

100

0.998
  pilC Vibrio campbellii strain DS40M4

73.5

98.039

0.721
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402