Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY16_RS02315 Genome accession   NZ_CP053802
Coordinates   483360..484235 (-) Length   291 a.a.
NCBI ID   WP_175247952.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478360..489235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS02295 (HPY16_02295) parC 479292..481577 (+) 2286 WP_000102510.1 DNA topoisomerase IV subunit A -
  HPY16_RS02300 (HPY16_02300) yacG 481626..481823 (-) 198 WP_175247951.1 DNA gyrase inhibitor YacG -
  HPY16_RS02305 (HPY16_02305) zapD 481983..482723 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY16_RS02310 (HPY16_02310) coaE 482755..483363 (-) 609 WP_001913631.1 dephospho-CoA kinase -
  HPY16_RS02315 (HPY16_02315) pilD 483360..484235 (-) 876 WP_175247952.1 A24 family peptidase Machinery gene
  HPY16_RS02320 (HPY16_02320) pilC 484293..485519 (-) 1227 WP_175247953.1 type II secretion system F family protein Machinery gene
  HPY16_RS02325 (HPY16_02325) pilB 485562..487250 (-) 1689 WP_134987328.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY16_RS02330 (HPY16_02330) - 487251..487712 (-) 462 WP_162906052.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HPY16_RS02335 (HPY16_02335) nadC 487957..488847 (-) 891 WP_134987327.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32493.77 Da        Isoelectric Point: 7.1619

>NTDB_id=447502 HPY16_RS02315 WP_175247952.1 483360..484235(-) (pilD) [Vibrio cholerae strain L6G]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFTYVLIAATFIDFDTLLLPDQLTLP
LMWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGREGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447502 HPY16_RS02315 WP_175247952.1 483360..484235(-) (pilD) [Vibrio cholerae strain L6G]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCCGAATGTGCGGCAAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACACCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGGGTGTTTGCCGTGGCGCTGC
TGTTTTTCACCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACATTACCC
TTAATGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTATTGGCTATTTAAACTGCTGACCGGTAGAGAAGGCATGGGCTATGGCGATTTCA
AATTGCTCGCCGCACTGGGCGCTTGGTTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATAGC
GGGGTGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCATTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

98.969

100

0.99
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443