Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY15_RS02320 Genome accession   NZ_CP053800
Coordinates   483076..484302 (-) Length   408 a.a.
NCBI ID   WP_046127052.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478076..489302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS02295 (HPY15_02295) parC 478077..480362 (+) 2286 WP_000102510.1 DNA topoisomerase IV subunit A -
  HPY15_RS02300 (HPY15_02300) yacG 480411..480608 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY15_RS02305 (HPY15_02305) zapD 480766..481506 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY15_RS02310 (HPY15_02310) coaE 481538..482146 (-) 609 WP_175235540.1 dephospho-CoA kinase -
  HPY15_RS02315 (HPY15_02315) pilD 482143..483018 (-) 876 WP_046127053.1 A24 family peptidase Machinery gene
  HPY15_RS02320 (HPY15_02320) pilC 483076..484302 (-) 1227 WP_046127052.1 type II secretion system F family protein Machinery gene
  HPY15_RS02325 (HPY15_02325) pilB 484345..486033 (-) 1689 WP_046127051.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY15_RS02330 (HPY15_02330) - 486056..486526 (-) 471 WP_046127050.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HPY15_RS02335 (HPY15_02335) nadC 486771..487661 (-) 891 WP_000665274.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY15_RS02340 (HPY15_02340) ampD 487957..488502 (+) 546 WP_175235542.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45134.43 Da        Isoelectric Point: 10.3424

>NTDB_id=447456 HPY15_RS02320 WP_046127052.1 483076..484302(-) (pilC) [Vibrio cholerae strain SO5Y]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPLLASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=447456 HPY15_RS02320 WP_046127052.1 483076..484302(-) (pilC) [Vibrio cholerae strain SO5Y]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTATCTCTTTTGGCACGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCACTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGATTTAGTGGAAACCGGAGAGATGTCCGGCAACTTACCTGAAGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAACTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCCAGCATGGTGGTGTTGGTCGCGCTCGGGGTATC
TTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACCC
AGCAAGTGCTGAAACTCTCACACTGGGTACAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTACTCGCCAAAGCGTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGCTCCTCGCCA
GTTTAAAAACCACGGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGAAGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTGTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.755

100

0.998
  pilC Vibrio campbellii strain DS40M4

73.5

98.039

0.721
  pilC Acinetobacter baumannii D1279779

42.892

100

0.429
  pilC Acinetobacter baylyi ADP1

42.26

99.755

0.422
  pilC Legionella pneumophila strain ERS1305867

42.462

97.549

0.414
  pilC Pseudomonas stutzeri DSM 10701

42.424

97.059

0.412
  pilG Neisseria gonorrhoeae MS11

41.542

98.529

0.409
  pilG Neisseria meningitidis 44/76-A

41.045

98.529

0.404