Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HPY15_RS02315 Genome accession   NZ_CP053800
Coordinates   482143..483018 (-) Length   291 a.a.
NCBI ID   WP_046127053.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477143..488018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS02295 (HPY15_02295) parC 478077..480362 (+) 2286 WP_000102510.1 DNA topoisomerase IV subunit A -
  HPY15_RS02300 (HPY15_02300) yacG 480411..480608 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY15_RS02305 (HPY15_02305) zapD 480766..481506 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY15_RS02310 (HPY15_02310) coaE 481538..482146 (-) 609 WP_175235540.1 dephospho-CoA kinase -
  HPY15_RS02315 (HPY15_02315) pilD 482143..483018 (-) 876 WP_046127053.1 A24 family peptidase Machinery gene
  HPY15_RS02320 (HPY15_02320) pilC 483076..484302 (-) 1227 WP_046127052.1 type II secretion system F family protein Machinery gene
  HPY15_RS02325 (HPY15_02325) pilB 484345..486033 (-) 1689 WP_046127051.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY15_RS02330 (HPY15_02330) - 486056..486526 (-) 471 WP_046127050.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HPY15_RS02335 (HPY15_02335) nadC 486771..487661 (-) 891 WP_000665274.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32414.65 Da        Isoelectric Point: 6.8349

>NTDB_id=447455 HPY15_RS02315 WP_046127053.1 482143..483018(-) (pilD) [Vibrio cholerae strain SO5Y]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLHQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=447455 HPY15_RS02315 WP_046127053.1 482143..483018(-) (pilD) [Vibrio cholerae strain SO5Y]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACCCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACACCGATTCGCGTGATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCACTTTCCGTTCGGGGTGTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCTATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGTGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTGCACCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCTTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75

98.969

0.742
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443