Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HQN78_RS23025 Genome accession   NZ_CP053750
Coordinates   4932196..4933419 (+) Length   407 a.a.
NCBI ID   WP_107800582.1    Uniprot ID   A0A2T5NMA2
Organism   Chromobacterium sp. Beijing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4927196..4938419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS23010 (HQN78_22780) - 4927318..4928718 (-) 1401 WP_235086595.1 deoxyribodipyrimidine photo-lyase -
  HQN78_RS23015 (HQN78_22785) - 4929068..4930198 (+) 1131 WP_158274338.1 porin -
  HQN78_RS23020 (HQN78_22790) pilF 4930418..4932124 (+) 1707 WP_107800583.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HQN78_RS23025 (HQN78_22795) pilC 4932196..4933419 (+) 1224 WP_107800582.1 type II secretion system F family protein Machinery gene
  HQN78_RS23030 (HQN78_22800) - 4933416..4934284 (+) 869 Protein_4533 A24 family peptidase -
  HQN78_RS23035 (HQN78_22805) coaE 4934298..4934885 (+) 588 Protein_4534 dephospho-CoA kinase -
  HQN78_RS23040 (HQN78_22810) zapD 4934924..4935682 (+) 759 WP_019100891.1 cell division protein ZapD -
  HQN78_RS23045 (HQN78_22815) yacG 4935722..4935910 (+) 189 WP_048409544.1 DNA gyrase inhibitor YacG -
  HQN78_RS23050 (HQN78_22820) - 4935977..4937215 (-) 1239 WP_107800579.1 N-acetylmuramoyl-L-alanine amidase -
  HQN78_RS23055 (HQN78_22825) tsaE 4937176..4937661 (-) 486 WP_370445205.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44706.65 Da        Isoelectric Point: 10.0725

>NTDB_id=446925 HQN78_RS23025 WP_107800582.1 4932196..4933419(+) (pilC) [Chromobacterium sp. Beijing]
MAVTVAKKATPGFVWEWEGKDKAGKAIRGELRAESEAVAKTQLRRQGINVVKIKRRRAGFGKRITERDITLFTRQLATMM
RAGVPLLQAFDIAAKGHGNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGETGGVLDSLLDKLATYKEK
VMAIKGKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDGFVHYWWLIFGVIFGSLFGF
LYAFKRTPKLQERMDRILLRMPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGASGNQVYADATKRIQNDVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLIIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=446925 HQN78_RS23025 WP_107800582.1 4932196..4933419(+) (pilC) [Chromobacterium sp. Beijing]
ATGGCAGTCACGGTAGCGAAAAAAGCGACGCCGGGCTTTGTCTGGGAGTGGGAAGGCAAGGACAAGGCGGGCAAGGCGAT
ACGCGGGGAATTGAGAGCGGAGTCCGAGGCGGTGGCCAAGACTCAGCTGCGGCGTCAAGGCATCAATGTCGTCAAGATCA
AGCGCCGGCGCGCCGGGTTCGGCAAGCGCATCACCGAGCGGGACATCACCTTGTTCACCCGGCAGCTGGCGACCATGATG
CGCGCCGGCGTGCCCCTGTTGCAGGCTTTCGACATCGCGGCCAAGGGCCACGGCAACCCCGCCGTGACCAAGATGCTGCT
GGAAGTGCGCGCGGATGTGGAAACCGGTCTGTCGCTGGCGGAGGCCTTCCGCAAGCGGCCCTTGTACTTCGACAAGCTGT
TCTGCAACATCATCGCCGCGGGCGAAACCGGCGGCGTGCTGGACTCCTTGCTGGACAAGCTGGCCACCTACAAGGAAAAG
GTGATGGCGATCAAGGGCAAGATCAAGTCGGCGCTGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATTACCGC
CGTCATCATGATTTACGTGATTCCGGCGTTCAAGGATTTGTTCTCCAGCTTCGGCGCCAATTTGCCGGCGCCGACCTTGT
TCGTGATCTGGCTGTCGGATGGCTTCGTCCATTACTGGTGGCTGATCTTCGGCGTGATCTTCGGCAGCCTGTTCGGCTTT
CTCTACGCCTTCAAGCGCACGCCCAAGCTGCAAGAGCGGATGGACCGCATTCTGCTGCGCATGCCGGTAATTGGCGACAT
CATCCGCAAAGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACCTTGTTCGCCGCCGGGGTGCCGCTGGTGGAAGCGC
TGGATTCGGTGGGCGGCGCCTCCGGCAATCAGGTGTACGCGGACGCCACTAAGCGGATTCAGAACGACGTCAGCACCGGC
TCCAGCCTCAATTATTCGATGCAACGCACCGACTTGTTCCCTAATATGGTGCTGCAAATGACCTCGATCGGCGAGGAGTC
CGGCTCGCTGGACCAGATGCTGGACAAGGTGGCGGATTTTTACGAAGAAGAAGTCGATAATGCGGTGGCCGCGCTGTCCA
GCTTGCTGGAGCCGGCCATCATGGTGATTCTGGGGATCTTGATCGGCGGTTTGATCATTGCGATGTATATGCCGATTTTC
AAAATGGGGCAGGTGGTTGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5NMA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.96

99.263

0.536
  pilC Pseudomonas stutzeri DSM 10701

52.84

99.509

0.526
  pilG Neisseria gonorrhoeae MS11

53.964

96.069

0.518
  pilG Neisseria meningitidis 44/76-A

53.708

96.069

0.516
  pilC Acinetobacter baylyi ADP1

50.246

99.754

0.501
  pilC Acinetobacter baumannii D1279779

48.642

99.509

0.484
  pilC Vibrio cholerae strain A1552

38.424

99.754

0.383
  pilC Vibrio campbellii strain DS40M4

38.847

98.034

0.381