Detailed information NTG0446875

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: HPQ68_RS03000
• Genome accession: NZ_CP053748
• Coordinates: 671999..673216 (+)
• Length: 405 a.a.
• NCBI ID: WP_255756396.1
• Uniprot ID: -
• Organism: Massilia sp. erpn
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 666999..678216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPQ68_RS02985 (HPQ68_02980)	-	667773..668591 (-)	819	WP_255756393.1	AraC family transcriptional regulator	-
HPQ68_RS02990 (HPQ68_02985)	-	668838..670127 (+)	1290	WP_255756394.1	HlyC/CorC family transporter	-
HPQ68_RS02995 (HPQ68_02990)	pilF	670222..671952 (+)	1731	WP_255756395.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HPQ68_RS03000 (HPQ68_02995)	pilC	671999..673216 (+)	1218	WP_255756396.1	type II secretion system F family protein	Machinery gene
HPQ68_RS03005 (HPQ68_03000)	-	673324..675507 (+)	2184	WP_255756397.1	serine/threonine-protein kinase	-
HPQ68_RS03010 (HPQ68_03005)	-	675504..676064 (+)	561	WP_255756398.1	hypothetical protein	-
HPQ68_RS03015 (HPQ68_03010)	-	676061..677608 (-)	1548	WP_255756399.1	sigma 54-interacting transcriptional regulator	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44387.24 Da
• Isoelectric Point: 9.8773

>NTDB_id=446875 HPQ68_RS03000 WP_255756396.1 671999..673216(+) (pilC) [Massilia sp. erpn]
MARNAGNQIKESVFAWEGKDKSGKTVRGELRAGGEAVVNVTLRRQGIVVTKVKKKAYRSGKKVSDKDITLFTRQLATMMK
AGVPLLQSFDIVGKGHANPSVSKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKT
LAMKAKIKSALMYPVSILAVAFIVTAVIMIWVVPAFKEVFSSFGADLPAPTVFVMTVSEYFVKYWYVIFGTLFGGLYFFF
QSWRRSLKMQQAMDRFLLKIPVFGDVVRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNHVYLEATRRIQNEVSTGT
SLTVAMQNADVFPNMVTQMVAIGEESGALDAMLGKVADFYEEEVDEAVASLSSLMEPMIMVILGVLIGGLVVAMYLPIFK
LGSVV

Nucleotide

• Length: 1218 bp

>NTDB_id=446875 HPQ68_RS03000 WP_255756396.1 671999..673216(+) (pilC) [Massilia sp. erpn]
ATGGCAAGGAATGCGGGCAACCAGATCAAGGAATCGGTCTTCGCCTGGGAGGGCAAGGACAAGAGCGGCAAGACCGTGCG
TGGCGAGCTGCGTGCCGGCGGCGAGGCGGTGGTCAATGTCACCCTGCGGCGCCAGGGCATCGTCGTCACCAAGGTCAAGA
AAAAAGCCTACCGCTCCGGCAAGAAGGTCAGCGACAAGGACATCACCCTCTTCACGCGCCAGCTGGCGACGATGATGAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATTGTAGGCAAGGGCCACGCCAACCCTTCCGTGTCCAAGCTGGTGATGGA
CCTGCGTGCCGACATCGAGACCGGCACCAGCCTGAATCAGGCCTTCCGCAAATTCCCGCTGTACTTCGATCCGCTGTTCT
GCAATCTGGTGGGCGCGGGCGAGCAGGCCGGGATCCTGGAGGATCTGCTGACCAGGCTCGCCATCTACAAGGAAAAGACC
CTGGCCATGAAGGCCAAGATCAAGTCGGCCCTGATGTATCCGGTATCGATCCTGGCGGTGGCCTTCATCGTCACCGCCGT
CATCATGATCTGGGTGGTGCCGGCCTTCAAGGAGGTGTTCAGCAGCTTCGGCGCCGACCTGCCCGCACCCACCGTATTCG
TGATGACGGTGTCCGAATACTTCGTCAAATACTGGTACGTCATTTTCGGCACCTTGTTCGGCGGCCTGTATTTCTTCTTC
CAGTCCTGGCGCCGGTCGCTCAAAATGCAGCAGGCGATGGACCGCTTCCTGCTCAAGATCCCCGTCTTCGGCGACGTGGT
GCGCAAGGCGACCATCGCGCGCTGGACGCGCACCCTGGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTGGAGGCGCTGG
ACTCGGTGGGCGGAGCGTCGGGCAACCATGTGTACCTGGAAGCGACGCGCCGCATCCAGAATGAAGTCAGCACCGGCACC
AGCCTGACGGTGGCCATGCAGAATGCCGACGTGTTCCCGAACATGGTCACGCAGATGGTGGCCATCGGCGAGGAATCGGG
CGCGCTGGACGCCATGCTGGGCAAGGTGGCCGATTTTTACGAGGAGGAAGTGGACGAGGCGGTGGCCTCGCTGTCGAGTC
TGATGGAGCCGATGATCATGGTGATCCTCGGCGTGTTGATCGGCGGCCTGGTGGTCGCCATGTATCTGCCCATCTTCAAG
CTGGGATCGGTGGTGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	55.446	99.753	0.553
pilC	Legionella pneumophila strain ERS1305867	54.798	97.778	0.536
pilG	Neisseria gonorrhoeae MS11	52.078	100	0.526
pilG	Neisseria meningitidis 44/76-A	51.834	100	0.523
pilC	Acinetobacter baylyi ADP1	51.759	98.272	0.509
pilC	Acinetobacter baumannii D1279779	51.889	98.025	0.509
pilC	Vibrio campbellii strain DS40M4	40.302	98.025	0.395
pilC	Vibrio cholerae strain A1552	39.646	97.778	0.388
pilC	Thermus thermophilus HB27	36.386	100	0.373