Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HPY04_RS02385 Genome accession   NZ_CP053744
Coordinates   498842..500068 (-) Length   408 a.a.
NCBI ID   WP_175248720.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493842..505068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS02360 (HPY04_02360) parC 493843..496128 (+) 2286 WP_000102513.1 DNA topoisomerase IV subunit A -
  HPY04_RS02365 (HPY04_02365) yacG 496177..496374 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  HPY04_RS02370 (HPY04_02370) zapD 496532..497272 (-) 741 WP_000207194.1 cell division protein ZapD -
  HPY04_RS02375 (HPY04_02375) coaE 497304..497912 (-) 609 WP_032479520.1 dephospho-CoA kinase -
  HPY04_RS02380 (HPY04_02380) pilD 497909..498784 (-) 876 WP_175248719.1 A24 family peptidase Machinery gene
  HPY04_RS02385 (HPY04_02385) pilC 498842..500068 (-) 1227 WP_175248720.1 type II secretion system F family protein Machinery gene
  HPY04_RS02390 (HPY04_02390) pilB 500111..501799 (-) 1689 WP_175248721.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HPY04_RS02395 (HPY04_02395) pilA 501801..502232 (-) 432 WP_057563244.1 pilin Machinery gene
  HPY04_RS02400 (HPY04_02400) nadC 502477..503367 (-) 891 WP_000665277.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPY04_RS02405 (HPY04_02405) ampD 503669..504214 (+) 546 WP_000567314.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HPY04_RS02410 (HPY04_02410) fldB 504363..504881 (-) 519 WP_019828645.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45122.44 Da        Isoelectric Point: 10.3424

>NTDB_id=446774 HPY04_RS02385 WP_175248720.1 498842..500068(-) (pilC) [Vibrio cholerae strain SA3G]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=446774 HPY04_RS02385 WP_175248720.1 498842..500068(-) (pilC) [Vibrio cholerae strain SA3G]
ATGAAAGCAACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCCTAACCCATCGCGTGAAAGGCAAAGACATCACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTCGAAACCGGAGAGATGTCAGGTAACTTACCAGAAGTGTTTGAGCGTTTAGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCTAAGGTGATTAAAGCGCTCATTTACCCCAGTATGGTGATGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAGTTTGAAAGCATGTTTAAAGGCTTTGGTGCCGAGCTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCTGCGGCCATTTTTGGC
TTGAAAGCGCTACGTAAAAACTCCTTCCAGATTCGTTTAAAAACCAGTCGATTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTATATTGCGATGCGCAATACCGACGCTTTTCCGGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACAGTCGATAACTTGG
GCAAGATTCTTGAGCCGCTGATCATCGTGTTTCTTGGGACAGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.265

100

0.993
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.462

97.549

0.414
  pilC Pseudomonas stutzeri DSM 10701

41.919

97.059

0.407
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4