Detailed information NTG0446774

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I5U70_RS07100
• Genome accession: NZ_CP065412
• Coordinates: 1507244..1508248 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate P33
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1502244..1513248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5U70_RS07070 (I5U70_07070)	fghA	1502336..1503187 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
I5U70_RS07075 (I5U70_07075)	ispF	1503258..1503731 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I5U70_RS07080 (I5U70_07080)	truD	1503728..1504795 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
I5U70_RS07085 (I5U70_07085)	surE	1504783..1505532 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
I5U70_RS07090 (I5U70_07090)	-	1505565..1506200 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I5U70_RS07095 (I5U70_07095)	-	1506246..1507139 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
I5U70_RS07100 (I5U70_07100)	rpoS	1507244..1508248 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
I5U70_RS07105 (I5U70_07105)	fdxA	1508674..1508997 (-)	324	WP_003092272.1	ferredoxin FdxA	-
I5U70_RS07110 (I5U70_07110)	mutS	1509064..1511631 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
I5U70_RS07115 (I5U70_07115)	-	1511757..1512764 (-)	1008	WP_191519407.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=446774 I5U70_RS07100 WP_003113871.1 1507244..1508248(+) (rpoS) [Pseudomonas aeruginosa isolate P33]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=446774 I5U70_RS07100 WP_003113871.1 1507244..1508248(+) (rpoS) [Pseudomonas aeruginosa isolate P33]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653