Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BANAU_RS08710 Genome accession   NC_017061
Coordinates   1748710..1749960 (+) Length   416 a.a.
NCBI ID   WP_014417802.1    Uniprot ID   I2C5C0
Organism   Bacillus velezensis YAU B9601-Y2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1743710..1754960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BANAU_RS08680 (BANAU_1642) yfmH 1743793..1745079 (+) 1287 WP_014417799.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BANAU_RS08685 (BANAU_1643) ymfI 1745139..1745867 (+) 729 WP_014417800.1 elongation factor P 5-aminopentanone reductase -
  BANAU_RS08690 (BANAU_1644) - 1745943..1746200 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  BANAU_RS08695 (BANAU_1645) - 1746328..1747119 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  BANAU_RS08700 (BANAU_1646) - 1747138..1748037 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  BANAU_RS08705 (BANAU_1647) pgsA 1748111..1748692 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BANAU_RS08710 (BANAU_1648) cinA 1748710..1749960 (+) 1251 WP_014417802.1 competence/damage-inducible protein A Machinery gene
  BANAU_RS08715 (BANAU_1649) recA 1750131..1751174 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  BANAU_RS08720 (BANAU_1650) - 1751341..1752522 (+) 1182 WP_014417803.1 serine hydrolase domain-containing protein -
  BANAU_RS08725 (BANAU_1651) rny 1752815..1754374 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45139.47 Da        Isoelectric Point: 5.2580

>NTDB_id=44613 BANAU_RS08710 WP_014417802.1 1748710..1749960(+) (cinA) [Bacillus velezensis YAU B9601-Y2]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECARELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=44613 BANAU_RS08710 WP_014417802.1 1748710..1749960(+) (cinA) [Bacillus velezensis YAU B9601-Y2]
ATGGAAATAGCAAAAAAAGCAGAGATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACTGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAGAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C5C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment