Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HA037_RS14015 Genome accession   NZ_CP053636
Coordinates   2825547..2826017 (+) Length   156 a.a.
NCBI ID   WP_000934753.1    Uniprot ID   A0A1S5YP95
Organism   Staphylococcus aureus strain 14640     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2804733..2831761 2825547..2826017 within 0


Gene organization within MGE regions


Location: 2804733..2831761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA037_RS13875 (HA037_13890) groES 2804733..2805017 (+) 285 WP_000917289.1 co-chaperone GroES -
  HA037_RS13880 (HA037_13895) groL 2805093..2806709 (+) 1617 WP_000240642.1 chaperonin GroEL -
  HA037_RS13885 (HA037_13900) - 2807249..2808556 (-) 1308 WP_001045079.1 TrkH family potassium uptake protein -
  HA037_RS13890 (HA037_13905) - 2809059..2810282 (-) 1224 WP_000206625.1 ArgE/DapE family deacylase -
  HA037_RS13895 (HA037_13910) lukH 2810718..2811773 (+) 1056 WP_000791411.1 bi-component leukocidin LukGH subunit H -
  HA037_RS13900 (HA037_13915) lukG 2811795..2812811 (+) 1017 WP_000595392.1 bi-component leukocidin LukGH subunit G -
  HA037_RS13905 (HA037_13920) sph 2813049..2813879 (-) 831 Protein_2720 sphingomyelin phosphodiesterase -
  HA037_RS13910 (HA037_13925) - 2813930..2814967 (-) 1038 WP_000857199.1 site-specific integrase -
  HA037_RS13915 (HA037_13930) - 2815158..2815871 (-) 714 WP_001549185.1 type II toxin-antitoxin system PemK/MazF family toxin -
  HA037_RS13920 (HA037_13935) - 2815949..2816131 (-) 183 WP_000705246.1 hypothetical protein -
  HA037_RS13925 (HA037_13940) - 2816335..2816676 (-) 342 WP_000591749.1 hypothetical protein -
  HA037_RS13930 (HA037_13945) - 2816682..2817614 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  HA037_RS13935 (HA037_13950) - 2817630..2818343 (-) 714 WP_001031454.1 XRE family transcriptional regulator -
  HA037_RS13940 (HA037_13955) - 2818306..2818479 (+) 174 WP_001801500.1 hypothetical protein -
  HA037_RS13945 (HA037_13960) - 2818476..2818739 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  HA037_RS13950 (HA037_13965) - 2818755..2818970 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  HA037_RS13955 (HA037_13970) - 2818959..2819288 (-) 330 WP_000180411.1 hypothetical protein -
  HA037_RS13960 (HA037_13975) - 2819339..2820091 (+) 753 WP_153171201.1 phage antirepressor KilAC domain-containing protein -
  HA037_RS13965 (HA037_13980) - 2820107..2820283 (+) 177 WP_001001356.1 hypothetical protein -
  HA037_RS13970 (HA037_13985) - 2820280..2820510 (-) 231 WP_000549548.1 hypothetical protein -
  HA037_RS13975 (HA037_13990) - 2820569..2820889 (+) 321 WP_001120199.1 DUF771 domain-containing protein -
  HA037_RS13980 (HA037_13995) - 2820886..2821047 (+) 162 WP_001285960.1 DUF1270 domain-containing protein -
  HA037_RS13985 (HA037_14000) - 2821142..2821461 (+) 320 Protein_2736 DUF2482 family protein -
  HA037_RS13990 (HA037_14005) - 2821442..2821702 (+) 261 WP_000291513.1 DUF1108 family protein -
  HA037_RS13995 (HA037_14010) - 2821711..2821974 (+) 264 WP_001205732.1 hypothetical protein -
  HA037_RS14000 (HA037_14015) - 2821983..2823926 (+) 1944 WP_000700561.1 AAA family ATPase -
  HA037_RS14005 (HA037_14020) - 2823928..2824848 (+) 921 WP_000138475.1 recombinase RecT -
  HA037_RS14010 (HA037_14025) - 2824929..2825546 (+) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  HA037_RS14015 (HA037_14030) ssbA 2825547..2826017 (+) 471 WP_000934753.1 single-stranded DNA-binding protein Machinery gene
  HA037_RS14020 (HA037_14035) - 2826047..2826940 (+) 894 WP_000148333.1 DnaD domain-containing protein -
  HA037_RS14025 (HA037_14040) - 2826947..2827165 (+) 219 WP_000338530.1 hypothetical protein -
  HA037_RS14030 (HA037_14045) - 2827174..2827578 (+) 405 WP_000401977.1 RusA family crossover junction endodeoxyribonuclease -
  HA037_RS14035 (HA037_14050) - 2827591..2827959 (+) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  HA037_RS14040 (HA037_14055) - 2827963..2828205 (+) 243 WP_000131383.1 phi PVL orf 51-like protein -
  HA037_RS14045 (HA037_14060) - 2828214..2828585 (+) 372 WP_001549172.1 hypothetical protein -
  HA037_RS14050 (HA037_14065) - 2828578..2828814 (+) 237 WP_001065101.1 DUF1024 family protein -
  HA037_RS14055 (HA037_14070) - 2828804..2829046 (+) 243 WP_000700108.1 hypothetical protein -
  HA037_RS14060 (HA037_14075) - 2829039..2829572 (+) 534 WP_000181819.1 dUTP diphosphatase -
  HA037_RS14065 (HA037_14080) - 2829609..2829854 (+) 246 WP_001282074.1 hypothetical protein -
  HA037_RS14070 (HA037_14085) - 2829851..2830057 (+) 207 WP_000195803.1 DUF1381 domain-containing protein -
  HA037_RS14075 (HA037_14090) - 2830054..2830440 (+) 387 WP_000592207.1 hypothetical protein -
  HA037_RS14080 (HA037_14095) - 2830437..2830586 (+) 150 WP_000595265.1 transcriptional activator RinB -
  HA037_RS14085 (HA037_14100) - 2830586..2830786 (+) 201 WP_000265043.1 DUF1514 family protein -
  HA037_RS14090 (HA037_14105) - 2830814..2831230 (+) 417 WP_000590122.1 hypothetical protein -
  HA037_RS14095 (HA037_14110) - 2831462..2831761 (+) 300 WP_000988336.1 HNH endonuclease -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17668.55 Da        Isoelectric Point: 5.2672

>NTDB_id=445852 HA037_RS14015 WP_000934753.1 2825547..2826017(+) (ssbA) [Staphylococcus aureus strain 14640]
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=445852 HA037_RS14015 WP_000934753.1 2825547..2826017(+) (ssbA) [Staphylococcus aureus strain 14640]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S5YP95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.497

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.378
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.5

76.923

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

47.5

76.923

0.365