Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HLJ12_RS00190 Genome accession   NZ_CP053180
Coordinates   37965..39203 (+) Length   412 a.a.
NCBI ID   WP_194185233.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain SP11     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32965..44203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLJ12_RS00170 (HLJ12_00170) - 33197..34465 (+) 1269 WP_010748490.1 pitrilysin family protein -
  HLJ12_RS00175 (HLJ12_00175) - 34458..35756 (+) 1299 WP_010748491.1 pitrilysin family protein -
  HLJ12_RS00180 (HLJ12_00180) - 36221..37123 (+) 903 WP_159161176.1 helix-turn-helix domain-containing protein -
  HLJ12_RS00185 (HLJ12_00185) pgsA 37256..37837 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HLJ12_RS00190 (HLJ12_00190) cinA 37965..39203 (+) 1239 WP_194185233.1 competence/damage-inducible protein A Machinery gene
  HLJ12_RS00195 (HLJ12_00195) recA 39306..40349 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  HLJ12_RS00200 (HLJ12_00200) rny 40593..42167 (+) 1575 WP_005232891.1 ribonuclease Y -
  HLJ12_RS00205 (HLJ12_00205) treR 42466..43182 (-) 717 WP_005226457.1 trehalose operon repressor -
  HLJ12_RS00210 (HLJ12_00210) pgmB 43237..43887 (-) 651 WP_010748494.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44857.95 Da        Isoelectric Point: 4.6520

>NTDB_id=443198 HLJ12_RS00190 WP_194185233.1 37965..39203(+) (cinA) [Enterococcus casseliflavus strain SP11]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTTATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVERLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=443198 HLJ12_RS00190 WP_194185233.1 37965..39203(+) (cinA) [Enterococcus casseliflavus strain SP11]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTATGTGGCGGTTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGAATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAACCGCTACCAGTTATTTGCTGCTGCCGGGACCACCAAGTGAACTGCAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTATTAGAGCAGTTTCCCCAAGAAGAAGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACCGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCG
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAGTGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
CGATTATGCGGTGGCGTTTACGGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGTACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCTGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

49.76

100

0.502
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

43.237

100

0.434