Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IUD25_RS02390 Genome accession   NZ_CP064328
Coordinates   564409..565035 (+) Length   208 a.a.
NCBI ID   WP_011097655.1    Uniprot ID   Q87E51
Organism   Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 559409..570035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD25_RS02375 (IUD25_02375) - 560606..561067 (-) 462 WP_004086550.1 hypothetical protein -
  IUD25_RS02385 (IUD25_02385) tig 562976..564271 (+) 1296 WP_004090161.1 trigger factor -
  IUD25_RS02390 (IUD25_02390) clpP 564409..565035 (+) 627 WP_011097655.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  IUD25_RS02395 (IUD25_02395) clpX 565163..566443 (+) 1281 WP_004090165.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  IUD25_RS02400 (IUD25_02400) lon 566595..569066 (+) 2472 WP_012382467.1 endopeptidase La -
  IUD25_RS02405 (IUD25_02405) - 569287..569571 (+) 285 WP_004090176.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22795.07 Da        Isoelectric Point: 4.8632

>NTDB_id=442655 IUD25_RS02390 WP_011097655.1 564409..565035(+) (clpP) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MDDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTA
GMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILALRARLNEI
LAKHTGQSLETIAHDTERDNFKSAVDAQAYGLVDQVFGQRQEELIQSS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=442655 IUD25_RS02390 WP_011097655.1 564409..565035(+) (clpP) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
GTGGATGATGTGACAAAAGCTTTAAATCTAGTGCCGATGGTGGTCGAACAGACTAGCCGGGGGGAGCGTGCTTACGACAT
ATATTCGCGTTTATTAAAGGAACGTCTCATCTTTCTGGTTGGCCCTATTGACGATTACATGGCCAATTTGATAGTAGCGC
AACTCCTTTTCTTGGAAGCGGAAAATCCCGAGAAGGACATTAATATTTACATTAATTCTCCGGGTGGTGTGGTTACTGCA
GGTATGGCCATTTACGACACGATGCAGTACATTAAACCCGCTGTCAGTACTATCTGTGTTGGTCAAGCTGCTTCTATGGG
GGCGTTGTTGCTGGCTTCAGGTGCGTCTGGTAAGCGTTATGCTTTGCCGAACTCGCGTGTGATGATCCATCAACCGTTAG
GTGGTTTCCAGGGGCAAGCTACTGACATAGACATTCATGCGCGTGAGATACTTGCTTTACGTGCACGTCTAAACGAAATA
TTGGCTAAGCATACGGGACAGTCCTTGGAGACTATTGCTCATGACACCGAGCGTGATAACTTTAAAAGTGCTGTTGATGC
CCAAGCTTATGGTTTGGTAGATCAGGTCTTTGGGCAGCGCCAGGAAGAGTTGATCCAGTCTTCTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87E51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.857

94.231

0.639
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

90.385

0.611
  clpP Lactococcus lactis subsp. cremoris KW2

55.263

91.346

0.505
  clpP Streptococcus thermophilus LMG 18311

53.093

93.269

0.495
  clpP Streptococcus thermophilus LMD-9

53.093

93.269

0.495
  clpP Streptococcus pneumoniae TIGR4

53.125

92.308

0.49
  clpP Streptococcus pneumoniae Rx1

53.125

92.308

0.49
  clpP Streptococcus pneumoniae D39

53.125

92.308

0.49
  clpP Streptococcus pneumoniae R6

53.125

92.308

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.684

91.346

0.49
  clpP Streptococcus pyogenes JRS4

52.632

91.346

0.481
  clpP Streptococcus pyogenes MGAS315

52.632

91.346

0.481
  clpP Streptococcus mutans UA159

49.746

94.712

0.471