Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DSM104443_RS00200 Genome accession   NZ_CP053069
Coordinates   43380..43745 (+) Length   121 a.a.
NCBI ID   WP_171096107.1    Uniprot ID   -
Organism   Usitatibacter rugosus strain 0125_3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 38380..48745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104443_RS00175 (DSM104443_00035) - 38903..40072 (-) 1170 WP_171088705.1 GGDEF domain-containing protein -
  DSM104443_RS00180 (DSM104443_00036) hemL 40072..41361 (-) 1290 WP_171088706.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DSM104443_RS00185 (DSM104443_00037) thiE 41354..42016 (-) 663 WP_171088707.1 thiamine phosphate synthase -
  DSM104443_RS00190 (DSM104443_00038) - 42013..42846 (-) 834 WP_171088708.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  DSM104443_RS00195 (DSM104443_00039) - 42982..43179 (+) 198 WP_171088709.1 rubredoxin -
  DSM104443_RS00200 (DSM104443_00040) pilG 43380..43745 (+) 366 WP_171096107.1 response regulator Regulator
  DSM104443_RS00205 (DSM104443_00041) - 43786..44151 (+) 366 WP_171088710.1 response regulator -
  DSM104443_RS00210 (DSM104443_00042) - 44156..44671 (+) 516 WP_171088711.1 chemotaxis protein CheW -
  DSM104443_RS00215 (DSM104443_00043) - 44705..46975 (+) 2271 WP_171088712.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13364.48 Da        Isoelectric Point: 7.3226

>NTDB_id=442656 DSM104443_RS00200 WP_171096107.1 43380..43745(+) (pilG) [Usitatibacter rugosus strain 0125_3]
MVIDDSNTIRRSAEIFLMQAGCQVILAENGFDALAKIADHQPDLIFVDIMMPRLDGYQTCALIKKSGKHGSTPVIMLSSK
DSLFDRARGRMVGSDEYLTKPFTKESLLKAVEAHLAHRNAA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=442656 DSM104443_RS00200 WP_171096107.1 43380..43745(+) (pilG) [Usitatibacter rugosus strain 0125_3]
ATGGTGATCGATGACAGCAATACGATCCGGCGATCCGCGGAGATATTCCTCATGCAGGCGGGCTGCCAGGTGATCCTGGC
GGAGAACGGCTTCGACGCGCTCGCGAAGATCGCCGATCACCAGCCGGACCTGATCTTCGTCGACATCATGATGCCGCGCC
TGGACGGCTACCAGACGTGCGCGCTGATCAAGAAGAGCGGCAAGCACGGCTCGACGCCGGTGATCATGCTGTCCTCGAAG
GACAGCCTGTTCGACCGCGCGCGGGGGCGGATGGTGGGCAGCGACGAGTACCTCACGAAGCCCTTCACGAAGGAAAGCCT
GCTGAAGGCGGTGGAAGCGCACCTGGCGCACAGAAACGCGGCGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.241

95.868

0.645
  vicR Streptococcus mutans UA159

40.87

95.041

0.388
  pilH Synechocystis sp. PCC 6803

38.462

96.694

0.372
  chiS Vibrio cholerae strain A1552

36.667

99.174

0.364