Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKK56_RS18935 Genome accession   NZ_CP052858
Coordinates   4259901..4261121 (+) Length   406 a.a.
NCBI ID   WP_169390314.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4254901..4266121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS18910 (HKK56_18910) nadC 4256295..4257143 (+) 849 WP_070994129.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HKK56_RS18915 (HKK56_18915) - 4257249..4257554 (-) 306 WP_070994130.1 DUF6388 family protein -
  HKK56_RS18925 (HKK56_18925) - 4257803..4259209 (-) 1407 WP_169390315.1 O-antigen ligase family protein -
  HKK56_RS18930 (HKK56_18930) - 4259287..4259697 (-) 411 WP_029291989.1 pilin -
  HKK56_RS18935 (HKK56_18935) pilC 4259901..4261121 (+) 1221 WP_169390314.1 type II secretion system F family protein Machinery gene
  HKK56_RS18940 (HKK56_18940) pilD 4261130..4261996 (+) 867 WP_272899027.1 A24 family peptidase Machinery gene
  HKK56_RS18945 (HKK56_18945) coaE 4261993..4262616 (+) 624 WP_169390312.1 dephospho-CoA kinase -
  HKK56_RS18950 (HKK56_18950) yacG 4262613..4262816 (+) 204 WP_092238375.1 DNA gyrase inhibitor YacG -
  HKK56_RS18955 (HKK56_18955) - 4262813..4263028 (-) 216 WP_029292000.1 hypothetical protein -
  HKK56_RS18960 (HKK56_18960) - 4263092..4263781 (-) 690 WP_169390311.1 energy-coupling factor ABC transporter permease -
  HKK56_RS18965 (HKK56_18965) - 4263778..4264245 (-) 468 WP_029292002.1 hypothetical protein -
  HKK56_RS18970 (HKK56_18970) - 4264348..4264977 (+) 630 WP_029292005.1 DUF1780 domain-containing protein -
  HKK56_RS18975 (HKK56_18975) - 4265017..4265190 (+) 174 WP_104910930.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43853.55 Da        Isoelectric Point: 9.8859

>NTDB_id=441814 HKK56_RS18935 WP_169390314.1 4259901..4261121(+) (pilC) [Pseudomonas sp. ADAK20]
MNDVTVSPTATYAWEGTLRNGRKVSGETRGHSPAVIKAQLRRQGITPVRVHVRSSLLCGLGNPITPADIALFTRQLATLL
KAGIPLLQAFDMIGEGFDSPAMRTMVQGLKQEIAAGNSLTAALSKQPQCFNPLYCSLIAAGEQAGTLETLLERVATHLEK
SQRLKARIKKAMTYPLVVVLVAMLVSSILLIHVVPQFESLFAGIDTPLPRFTLLVIGLSEFMQGAWWMLLLTAIASAWGI
RRAYRRHNGLRLWLDTGLLKLPLAGTLLKKTAVARYARTLATTFAAGVPLAQALDSVAAAAGNERFTQAITRMRQDVAIG
MQLNRTMTASGLFPGMAIQMTAIGEESGALDSMLEKVADHYETDVDNLVDNLSSLMEPLIMVVLGSIVGALVIAMYLPIF
QLGTAF

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=441814 HKK56_RS18935 WP_169390314.1 4259901..4261121(+) (pilC) [Pseudomonas sp. ADAK20]
ATGAATGATGTCACTGTGAGCCCCACCGCCACCTATGCTTGGGAAGGCACGTTGCGCAATGGCCGCAAGGTGTCCGGCGA
AACCCGTGGCCATAGCCCGGCCGTGATCAAGGCACAACTGCGCCGGCAAGGCATAACCCCGGTTCGGGTACACGTGCGCT
CCAGCCTCCTTTGCGGCCTGGGCAACCCAATCACCCCAGCCGATATTGCGCTGTTCACCCGCCAACTGGCGACCCTGCTG
AAGGCGGGAATTCCCTTGCTACAAGCCTTCGACATGATTGGCGAAGGCTTTGACAGCCCGGCCATGCGCACAATGGTCCA
AGGGCTGAAGCAGGAGATTGCCGCCGGCAACAGCCTGACCGCCGCGCTATCGAAACAGCCGCAGTGCTTCAACCCCCTGT
ATTGCAGCCTGATCGCGGCCGGCGAACAGGCCGGCACCCTGGAGACCTTGCTGGAGCGGGTAGCCACCCACCTGGAGAAG
AGCCAGCGCCTCAAGGCCCGGATCAAGAAGGCCATGACCTATCCGCTGGTGGTCGTGCTCGTGGCGATGCTGGTCAGCAG
CATCTTGCTGATCCACGTCGTGCCCCAATTCGAAAGCCTGTTCGCCGGCATCGACACACCGCTGCCACGCTTTACCCTGC
TGGTCATCGGGCTGTCCGAATTCATGCAAGGCGCATGGTGGATGCTATTGCTGACCGCAATCGCAAGTGCCTGGGGAATA
CGCCGCGCCTACCGCCGACACAACGGTTTGCGCCTGTGGCTGGACACTGGTTTGTTGAAACTGCCGCTGGCAGGCACACT
GCTGAAAAAAACCGCAGTCGCCCGCTACGCTCGCACACTCGCCACCACCTTTGCCGCTGGCGTACCGCTGGCACAGGCGC
TGGACTCAGTGGCCGCAGCCGCTGGCAACGAGCGGTTCACACAGGCAATCACGCGTATGCGCCAGGACGTGGCAATAGGA
ATGCAATTGAATCGAACCATGACCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATC
AGGAGCGCTGGACAGCATGCTGGAGAAGGTCGCCGATCATTATGAAACGGACGTCGACAACCTGGTGGACAACCTCAGCA
GCCTGATGGAGCCGCTGATCATGGTGGTGCTCGGCAGCATTGTCGGGGCACTGGTAATCGCCATGTACCTGCCGATCTTC
CAGCTTGGCACGGCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

97.537

0.567
  pilC Acinetobacter baylyi ADP1

52.02

97.537

0.507
  pilC Acinetobacter baumannii D1279779

51.01

97.537

0.498
  pilC Legionella pneumophila strain ERS1305867

46.814

100

0.47
  pilC Vibrio cholerae strain A1552

40.955

98.03

0.401
  pilG Neisseria gonorrhoeae MS11

39.747

97.291

0.387
  pilG Neisseria meningitidis 44/76-A

40.26

94.828

0.382
  pilC Vibrio campbellii strain DS40M4

38.75

98.522

0.382