Detailed information NTG0441815

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKK56_RS18940
• Genome accession: NZ_CP052858
• Coordinates: 4261130..4261996 (+)
• Length: 288 a.a.
• NCBI ID: WP_272899027.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4256130..4266996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK56_RS18910 (HKK56_18910)	nadC	4256295..4257143 (+)	849	WP_070994129.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HKK56_RS18915 (HKK56_18915)	-	4257249..4257554 (-)	306	WP_070994130.1	DUF6388 family protein	-
HKK56_RS18925 (HKK56_18925)	-	4257803..4259209 (-)	1407	WP_169390315.1	O-antigen ligase family protein	-
HKK56_RS18930 (HKK56_18930)	-	4259287..4259697 (-)	411	WP_029291989.1	pilin	-
HKK56_RS18935 (HKK56_18935)	pilC	4259901..4261121 (+)	1221	WP_169390314.1	type II secretion system F family protein	Machinery gene
HKK56_RS18940 (HKK56_18940)	pilD	4261130..4261996 (+)	867	WP_272899027.1	A24 family peptidase	Machinery gene
HKK56_RS18945 (HKK56_18945)	coaE	4261993..4262616 (+)	624	WP_169390312.1	dephospho-CoA kinase	-
HKK56_RS18950 (HKK56_18950)	yacG	4262613..4262816 (+)	204	WP_092238375.1	DNA gyrase inhibitor YacG	-
HKK56_RS18955 (HKK56_18955)	-	4262813..4263028 (-)	216	WP_029292000.1	hypothetical protein	-
HKK56_RS18960 (HKK56_18960)	-	4263092..4263781 (-)	690	WP_169390311.1	energy-coupling factor ABC transporter permease	-
HKK56_RS18965 (HKK56_18965)	-	4263778..4264245 (-)	468	WP_029292002.1	hypothetical protein	-
HKK56_RS18970 (HKK56_18970)	-	4264348..4264977 (+)	630	WP_029292005.1	DUF1780 domain-containing protein	-
HKK56_RS18975 (HKK56_18975)	-	4265017..4265190 (+)	174	WP_104910930.1	DUF3094 family protein	-
HKK56_RS18980 (HKK56_18980)	-	4265251..4266549 (+)	1299	WP_154906589.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31824.90 Da
• Isoelectric Point: 7.6219

>NTDB_id=441815 HKK56_RS18940 WP_272899027.1 4261130..4261996(+) (pilD) [Pseudomonas sp. ADAK20]
MDQLLILHPWLFVWAALVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLRPNSCCPHCSAPIRPW
ENIPVISYLLLRGRCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLNWGLLAMSLIDADHQLLPDVLVLP
LLWLGLILNYFELYVTLPDAVLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVGAI
AGVIVLRVRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=441815 HKK56_RS18940 WP_272899027.1 4261130..4261996(+) (pilD) [Pseudomonas sp. ADAK20]
CTGGACCAACTCCTGATCCTCCATCCCTGGTTGTTCGTCTGGGCAGCACTGGTGCTCGGGCTGATCGTCGGCAGCTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCATGAGATACTCGGCCTGCCTC
CGGAGCCCGGTGGCCCGACCTATAACCTGTTGCGCCCCAACTCCTGTTGCCCGCATTGTTCGGCGCCGATTCGCCCATGG
GAAAATATCCCGGTGATCAGTTATCTGCTGCTCAGGGGGCGCTGCGCGCGATGCCACGGCTCCATCAGCCCGCGCTACCC
GCTCACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATCGCCTGGCACTACGGCTTCGGCTGGCCGGCCGCTGGAGTGC
TGTTCTTGAACTGGGGCTTGCTGGCCATGAGCCTGATTGATGCCGACCACCAGCTATTACCGGATGTGCTGGTGCTGCCA
CTGCTGTGGCTGGGGCTGATCCTCAATTACTTCGAGCTGTATGTAACGCTGCCCGATGCAGTGTTGGGCGCGGTTGCCGG
GTACCTGAGCCTGTGGTCGGTGTTCTGGCTATTCAAGCTGTGCACTGGCAAGGACGGCATGGGCTATGGCGACTTCAAGC
TGCTAGCCCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCGTCGCTGGTGGGTGCGATC
GCAGGGGTGATTGTGTTGCGCGTGCGTAACGCGCAGACCTCGGTGCCCCTGCCTTTTGGCCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.196	99.306	0.538
pilD	Vibrio campbellii strain DS40M4	52.5	97.222	0.51
pilD	Neisseria gonorrhoeae MS11	51.852	93.75	0.486
pilD	Acinetobacter baumannii D1279779	49.819	96.181	0.479
pilD	Acinetobacter nosocomialis M2	49.097	96.181	0.472