Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HKK58_RS21690 Genome accession   NZ_CP052856
Coordinates   4829390..4830772 (+) Length   460 a.a.
NCBI ID   WP_119738051.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4824390..4835772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK58_RS21670 (HKK58_21670) - 4824518..4826986 (-) 2469 WP_169368036.1 penicillin-binding protein 1A -
  HKK58_RS21675 (HKK58_21675) pilM 4827205..4827858 (+) 654 WP_106577763.1 type IV pilus assembly protein PilM -
  HKK58_RS21680 (HKK58_21680) - 4827858..4828409 (+) 552 WP_106577526.1 PilN domain-containing protein -
  HKK58_RS21685 (HKK58_21685) - 4828406..4829377 (+) 972 WP_169368037.1 pilus assembly protein PilP -
  HKK58_RS21690 (HKK58_21690) pilQ 4829390..4830772 (+) 1383 WP_119738051.1 type IV pilus secretin PilQ family protein Machinery gene
  HKK58_RS21695 (HKK58_21695) aroK 4830777..4831295 (+) 519 WP_017138567.1 shikimate kinase AroK -
  HKK58_RS21700 (HKK58_21700) aroB 4831420..4832520 (+) 1101 WP_169368038.1 3-dehydroquinate synthase -
  HKK58_RS21705 (HKK58_21705) - 4832531..4834105 (+) 1575 WP_169368039.1 AAA family ATPase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49894.24 Da        Isoelectric Point: 5.1200

>NTDB_id=441773 HKK58_RS21690 WP_119738051.1 4829390..4830772(+) (pilQ) [Pseudomonas sp. ADAK22]
MKWTFSSFGVALWIAFTAPTAFAVPNRVDLIQLPPPGSAAPGTYNGAKLNLNFQNIDVRAVLQQIADVAGLNLVASDEVQ
GSITLRLKDVPWDQALDLVLQTKGLDKRVKAGVLLVAPADELAARELLTLESRRQMAELAPLRRELLQVNYAKAADLAKL
FQSVTGLEGAGDERGSVAVDDRTNNIIAYQTGERLEELRRIVAQLDVPVRQVMIEARIVEANVDYDKSLGVRWGGRLNRA
NWGAGGISKPLAAGAEPPQNPVSSPFVDMGALTGTSGLGIAYITNNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARI
LKGTEIPYQESSSSGATSVSFKEASLSLEVTPQITPDGWVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETI
VIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVMAERKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=441773 HKK58_RS21690 WP_119738051.1 4829390..4830772(+) (pilQ) [Pseudomonas sp. ADAK22]
ATGAAATGGACTTTCTCGTCCTTCGGTGTGGCGCTATGGATAGCGTTCACGGCACCGACGGCATTCGCTGTGCCCAATCG
TGTGGACCTTATCCAGCTGCCGCCGCCTGGCAGCGCGGCGCCAGGCACCTATAACGGCGCCAAACTGAACCTCAACTTCC
AGAACATCGATGTGCGCGCGGTATTGCAGCAGATTGCCGATGTTGCCGGGCTCAATCTGGTTGCCAGCGATGAAGTGCAA
GGCTCCATTACCTTGCGGCTCAAGGACGTGCCCTGGGACCAGGCGTTGGACCTGGTATTGCAGACCAAGGGGCTGGATAA
GCGCGTGAAGGCCGGCGTTTTGCTGGTGGCACCTGCCGATGAGCTGGCGGCGCGTGAATTGCTCACGCTGGAATCGCGCA
GGCAGATGGCCGAGCTGGCGCCTTTGCGCCGCGAGCTGTTACAGGTCAACTACGCCAAGGCGGCGGACCTGGCCAAGCTG
TTCCAGTCGGTGACAGGCCTTGAAGGCGCCGGCGATGAGCGCGGTTCCGTGGCAGTGGATGACCGCACCAATAACATCAT
TGCCTACCAGACTGGCGAGCGCCTCGAAGAGCTGCGCCGGATTGTGGCGCAACTGGACGTCCCGGTGCGCCAAGTGATGA
TCGAGGCGCGGATCGTCGAGGCCAATGTTGATTATGACAAAAGCCTCGGCGTGCGCTGGGGAGGGCGACTCAACCGTGCA
AATTGGGGCGCTGGGGGCATCAGCAAACCCTTGGCCGCCGGTGCCGAGCCACCGCAGAACCCTGTCAGTTCGCCATTTGT
CGACATGGGTGCGCTCACCGGTACATCGGGCTTGGGCATCGCCTATATCACCAACAACCTGTTGCTGGACCTTGAATTGA
CGGCCATGGAGAAAACCGGCAACGGCGAAATCGTCTCACAGCCCAAGGTGGTCACTTCCGACAAGGAAACGGCGCGGATC
CTCAAGGGCACCGAGATTCCCTATCAGGAATCCAGCTCCAGTGGCGCCACTTCAGTGTCGTTCAAGGAAGCTTCGCTATC
GCTGGAAGTGACCCCGCAAATCACCCCTGATGGCTGGGTGATCATGGAGGTCAAGGTCACCAAGGATGAGCCCGACTACC
TGAACAAGCTCAACGACGTGCCACCGATCAAGAAAAACGAAGTCAACGCCAAGGTGCTGGTCAAGGATGGCGAGACCATC
GTCATCGGTGGCGTTTTCTCCAATACCCAGAGCAAAGTGGTAGATAAAGTGCCATTTTTAGGCGATGTGCCGTATCTTGG
CCGCCTTTTCCGGCGCGATGTGATGGCGGAAAGAAAATCCGAGCTGCTGGTATTCCTGACTCCGCGTATTATGAATAACC
AGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(146-211)

Secretin and TonB N terminus short domain (STN)

(72-118)

Bacterial type II and III secretion system protein (Secretin)

(295-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.789

94.783

0.68
  pilQ Acinetobacter baumannii strain A118

41.469

100

0.417
  pilQ Acinetobacter baumannii D1279779

41.469

100

0.417
  comQ Acinetobacter baylyi ADP1

42.762

97.609

0.417
  pilQ Vibrio campbellii strain DS40M4

44.681

91.957

0.411
  pilQ Legionella pneumophila strain ERS1305867

44.524

91.304

0.407
  pilQ Legionella pneumophila strain Lp02

44.524

91.304

0.407
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.023

93.478

0.402
  pilQ Vibrio cholerae strain A1552

43.023

93.478

0.402