Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IPZ77_RS19820 Genome accession   NZ_CP064057
Coordinates   4340176..4340835 (+) Length   219 a.a.
NCBI ID   WP_030725588.1    Uniprot ID   A0A0F7FTC1
Organism   Streptomyces sp. XC 2026     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4335176..4345835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ77_RS19790 (IPZ77_19790) - 4335750..4336838 (-) 1089 WP_234389882.1 acyltransferase family protein -
  IPZ77_RS19795 (IPZ77_19795) - 4337135..4337350 (+) 216 WP_030725579.1 hypothetical protein -
  IPZ77_RS19810 (IPZ77_19810) tig 4337838..4339244 (+) 1407 WP_200367113.1 trigger factor -
  IPZ77_RS19815 (IPZ77_19815) clpP 4339497..4340099 (+) 603 WP_030725585.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS19820 (IPZ77_19820) clpP 4340176..4340835 (+) 660 WP_030725588.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS19825 (IPZ77_19825) clpX 4341060..4342364 (+) 1305 WP_030725591.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  IPZ77_RS19830 (IPZ77_19830) - 4342470..4343537 (-) 1068 WP_200367115.1 hypothetical protein -
  IPZ77_RS19835 (IPZ77_19835) - 4343636..4344481 (-) 846 WP_200367117.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24386.70 Da        Isoelectric Point: 4.6426

>NTDB_id=441502 IPZ77_RS19820 WP_030725588.1 4340176..4340835(+) (clpP) [Streptomyces sp. XC 2026]
MTSSQRFPGSGIYDRLPAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDI
QIYINSPGGSFTALTAIYDTMDFVKPEIQTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPYSETGRGQVSDLEIA
AREVQRMRDQLEEMLAKHSTRPIEQIRDDIERDKILTAKEAVDYGLIDQIVTTRSTVSV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=441502 IPZ77_RS19820 WP_030725588.1 4340176..4340835(+) (clpP) [Streptomyces sp. XC 2026]
ATGACTTCATCCCAGCGGTTCCCCGGCTCCGGCATCTACGACCGGCTCCCGGCCGAGTCCCGTTACATCGTCCCGCGCTT
CGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTCATCTTCCTCGGCG
TGCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGGGACATC
CAGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGGACTTCGTCAAGCCGGA
GATCCAGACCGTGTGCATGGGCCAGGCCGCCTCGGCCGCGGCCGTGCTGCTGGCGGCGGGCACCCCGGGCAAGCGGCTGG
CGCTGCCCAACGCCCGGGTGCTGATCCACCAGCCGTACTCCGAGACCGGTCGCGGTCAGGTCTCCGACCTGGAGATCGCC
GCCCGTGAGGTGCAGCGGATGCGCGACCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCCGGCCGATCGAGCAGATCCG
TGACGACATCGAGCGGGACAAGATCCTCACCGCCAAGGAAGCGGTGGACTACGGTCTCATCGACCAGATCGTCACCACCC
GTTCCACCGTCTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(33-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7FTC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

86.758

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.09

86.301

0.406
  clpP Lactococcus lactis subsp. cremoris KW2

45.641

89.041

0.406
  clpP Streptococcus mutans UA159

45.361

88.584

0.402
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.615

89.041

0.397
  clpP Streptococcus thermophilus LMG 18311

44.56

88.128

0.393
  clpP Streptococcus thermophilus LMD-9

44.56

88.128

0.393
  clpP Streptococcus pyogenes MGAS315

44.737

86.758

0.388
  clpP Streptococcus pyogenes JRS4

44.737

86.758

0.388
  clpP Streptococcus pneumoniae R6

43.299

88.584

0.384
  clpP Streptococcus pneumoniae TIGR4

43.299

88.584

0.384
  clpP Streptococcus pneumoniae Rx1

43.299

88.584

0.384
  clpP Streptococcus pneumoniae D39

43.299

88.584

0.384