Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IPZ77_RS19815 Genome accession   NZ_CP064057
Coordinates   4339497..4340099 (+) Length   200 a.a.
NCBI ID   WP_030725585.1    Uniprot ID   -
Organism   Streptomyces sp. XC 2026     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4334497..4345099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ77_RS19790 (IPZ77_19790) - 4335750..4336838 (-) 1089 WP_234389882.1 acyltransferase family protein -
  IPZ77_RS19795 (IPZ77_19795) - 4337135..4337350 (+) 216 WP_030725579.1 hypothetical protein -
  IPZ77_RS19810 (IPZ77_19810) tig 4337838..4339244 (+) 1407 WP_200367113.1 trigger factor -
  IPZ77_RS19815 (IPZ77_19815) clpP 4339497..4340099 (+) 603 WP_030725585.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS19820 (IPZ77_19820) clpP 4340176..4340835 (+) 660 WP_030725588.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IPZ77_RS19825 (IPZ77_19825) clpX 4341060..4342364 (+) 1305 WP_030725591.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  IPZ77_RS19830 (IPZ77_19830) - 4342470..4343537 (-) 1068 WP_200367115.1 hypothetical protein -
  IPZ77_RS19835 (IPZ77_19835) - 4343636..4344481 (-) 846 WP_200367117.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21361.13 Da        Isoelectric Point: 4.6044

>NTDB_id=441501 IPZ77_RS19815 WP_030725585.1 4339497..4340099(+) (clpP) [Streptomyces sp. XC 2026]
MPSAAAEPSNGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQYV
KNDVVTIAMGMAASMGQFLLTAGAPGKRFALPNAEILIHQPSAGLAGSASDIKIHAEQLLRTKRKMAKLSALHSGQSEEQ
WDRDADRDRWFNAEEARDYGLLDRVITSAADIEGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=441501 IPZ77_RS19815 WP_030725585.1 4339497..4340099(+) (clpP) [Streptomyces sp. XC 2026]
ATGCCTTCCGCCGCCGCTGAACCCTCCAACGGCGGTCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGCATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTGCTCGCCGCGGATCCCGACA
AGGACATCTTCCTTTACATCAACAGCCCCGGCGGCTCGATCACGGCGGGCATGGCGATCTACGACACCATGCAGTACGTG
AAGAACGACGTGGTGACCATCGCCATGGGCATGGCCGCCTCGATGGGTCAGTTCCTGCTCACCGCCGGTGCGCCCGGCAA
GCGCTTCGCGCTGCCGAACGCGGAGATCCTGATCCACCAGCCGTCCGCGGGCCTGGCCGGCTCCGCCTCGGACATCAAGA
TCCACGCCGAGCAGCTGCTGCGCACCAAGCGCAAGATGGCGAAGCTCTCGGCGCTGCACTCGGGCCAGTCCGAGGAGCAG
TGGGACCGCGACGCGGACCGCGACCGCTGGTTCAACGCCGAGGAGGCCCGCGACTACGGCCTGCTGGACCGGGTCATCAC
CAGCGCGGCCGACATCGAAGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.646

96

0.515
  clpP Streptococcus mutans UA159

50.794

94.5

0.48
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.267

93.5

0.47
  clpP Lactococcus lactis subsp. cremoris KW2

49.735

94.5

0.47
  clpP Streptococcus pneumoniae TIGR4

49.206

94.5

0.465
  clpP Streptococcus pneumoniae D39

49.206

94.5

0.465
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.206

94.5

0.465
  clpP Streptococcus pneumoniae Rx1

49.206

94.5

0.465
  clpP Streptococcus pneumoniae R6

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMG 18311

47.644

95.5

0.455
  clpP Streptococcus thermophilus LMD-9

47.644

95.5

0.455
  clpP Streptococcus pyogenes JRS4

47.619

94.5

0.45
  clpP Streptococcus pyogenes MGAS315

47.619

94.5

0.45