Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HIN87_RS04500 Genome accession   NZ_CP051869
Coordinates   912118..912600 (-) Length   160 a.a.
NCBI ID   WP_001046424.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 907118..917600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04465 (HIN87_04465) - 907227..908258 (+) 1032 WP_002007674.1 lipase secretion chaperone -
  HIN87_RS04470 (HIN87_04470) - 908373..909314 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HIN87_RS04475 (HIN87_04475) rplS 909367..909735 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  HIN87_RS04480 (HIN87_04480) trmD 909944..910684 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HIN87_RS04485 (HIN87_04485) rimM 910730..911278 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  HIN87_RS04490 (HIN87_04490) rpsP 911298..911549 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  HIN87_RS04495 (HIN87_04495) pilE 911696..912121 (-) 426 WP_031999633.1 type IV pilin protein Machinery gene
  HIN87_RS04500 (HIN87_04500) pilY2 912118..912600 (-) 483 WP_001046424.1 type IV pilin protein Machinery gene
  HIN87_RS04505 (HIN87_04505) pilY1 912613..916467 (-) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN87_RS04510 (HIN87_04510) pilX 916479..917297 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17577.81 Da        Isoelectric Point: 8.4834

>NTDB_id=441216 HIN87_RS04500 WP_001046424.1 912118..912600(-) (pilY2) [Acinetobacter baumannii strain Ab-D10a-a]
MNKYSILRFNQGVTLIELMVVIVIVAIFTSIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=441216 HIN87_RS04500 WP_001046424.1 912118..912600(-) (pilY2) [Acinetobacter baumannii strain Ab-D10a-a]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTACTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419