Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HIN87_RS04510 Genome accession   NZ_CP051869
Coordinates   916479..917297 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911479..922297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04495 (HIN87_04495) pilE 911696..912121 (-) 426 WP_031999633.1 type IV pilin protein Machinery gene
  HIN87_RS04500 (HIN87_04500) pilY2 912118..912600 (-) 483 WP_001046424.1 type IV pilin protein Machinery gene
  HIN87_RS04505 (HIN87_04505) pilY1 912613..916467 (-) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN87_RS04510 (HIN87_04510) pilX 916479..917297 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN87_RS04515 (HIN87_04515) pilW 917294..918295 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HIN87_RS04520 (HIN87_04520) pilV 918296..918856 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN87_RS04525 (HIN87_04525) fimU 918850..919323 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN87_RS04530 (HIN87_04530) ispH 919493..920443 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN87_RS04535 (HIN87_04535) gmk 920566..921195 (+) 630 WP_000015937.1 guanylate kinase -
  HIN87_RS04540 (HIN87_04540) rpoZ 921268..921546 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN87_RS04545 (HIN87_04545) - 921585..921715 (+) 131 Protein_880 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=441218 HIN87_RS04510 WP_000149374.1 916479..917297(-) (pilX) [Acinetobacter baumannii strain Ab-D10a-a]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=441218 HIN87_RS04510 WP_000149374.1 916479..917297(-) (pilX) [Acinetobacter baumannii strain Ab-D10a-a]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993