Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HIN87_RS04520 Genome accession   NZ_CP051869
Coordinates   918296..918856 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 913296..923856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04510 (HIN87_04510) pilX 916479..917297 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN87_RS04515 (HIN87_04515) pilW 917294..918295 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HIN87_RS04520 (HIN87_04520) pilV 918296..918856 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN87_RS04525 (HIN87_04525) fimU 918850..919323 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN87_RS04530 (HIN87_04530) ispH 919493..920443 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN87_RS04535 (HIN87_04535) gmk 920566..921195 (+) 630 WP_000015937.1 guanylate kinase -
  HIN87_RS04540 (HIN87_04540) rpoZ 921268..921546 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN87_RS04545 (HIN87_04545) - 921585..921715 (+) 131 Protein_880 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=441220 HIN87_RS04520 WP_002194578.1 918296..918856(-) (pilV) [Acinetobacter baumannii strain Ab-D10a-a]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=441220 HIN87_RS04520 WP_002194578.1 918296..918856(-) (pilV) [Acinetobacter baumannii strain Ab-D10a-a]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414