Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   IR210_RS03925 Genome accession   NZ_CP063983
Coordinates   816546..817784 (-) Length   412 a.a.
NCBI ID   WP_194446243.1    Uniprot ID   -
Organism   Escherichia coli strain 25DN     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 811546..822784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR210_RS03915 (IR210_03915) - 814355..815383 (+) 1029 WP_001044673.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -
  IR210_RS03920 (IR210_03920) - 815389..816384 (+) 996 WP_001208051.1 hypothetical protein -
  IR210_RS03925 (IR210_03925) kpsS 816546..817784 (-) 1239 WP_194446243.1 capsular biosynthesis protein Regulator
  IR210_RS03930 (IR210_03930) - 817819..819846 (-) 2028 WP_000579529.1 capsular polysaccharide biosynthesis protein -
  IR210_RS03935 (IR210_03935) kdsB 819843..820583 (-) 741 WP_001327873.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IR210_RS03940 (IR210_03940) - 820593..822269 (-) 1677 WP_001327874.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48760.29 Da        Isoelectric Point: 10.0935

>NTDB_id=441122 IR210_RS03925 WP_194446243.1 816546..817784(-) (kpsS) [Escherichia coli strain 25DN]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWDEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGGYYGGVKFENALGM
NKDFLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=441122 IR210_RS03925 WP_194446243.1 816546..817784(-) (kpsS) [Escherichia coli strain 25DN]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGGATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGACATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGGTTATTATGGAGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAAGATTTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

94.417

0.376