Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HIN89_RS01555 Genome accession   NZ_CP051862
Coordinates   317158..318384 (-) Length   408 a.a.
NCBI ID   WP_000279218.1    Uniprot ID   A0A836M511
Organism   Acinetobacter baumannii strain Ab-C102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312158..323384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS01525 (HIN89_01525) - 312189..313499 (+) 1311 WP_002126504.1 tetratricopeptide repeat protein -
  HIN89_RS01530 (HIN89_01530) - 313576..313902 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  HIN89_RS01535 (HIN89_01535) rlmB 314004..314753 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HIN89_RS01540 (HIN89_01540) - 314789..315703 (+) 915 WP_002126491.1 DMT family transporter -
  HIN89_RS01545 (HIN89_01545) coaE 315700..316296 (-) 597 WP_002126478.1 dephospho-CoA kinase -
  HIN89_RS18970 (HIN89_01550) pilD 316298..317158 (-) 861 WP_002126490.1 prepilin peptidase Machinery gene
  HIN89_RS01555 (HIN89_01555) pilC 317158..318384 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  HIN89_RS01560 (HIN89_01560) pilB 318414..320126 (-) 1713 WP_001274979.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HIN89_RS01565 (HIN89_01565) tpiA 320417..321211 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  HIN89_RS01570 (HIN89_01570) secG 321224..321553 (+) 330 WP_169040920.1 preprotein translocase subunit SecG -
  HIN89_RS01590 (HIN89_01590) rimP 322195..322719 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44923.43 Da        Isoelectric Point: 9.9566

>NTDB_id=441122 HIN89_RS01555 WP_000279218.1 317158..318384(-) (pilC) [Acinetobacter baumannii strain Ab-C102]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=441122 HIN89_RS01555 WP_000279218.1 317158..318384(-) (pilC) [Acinetobacter baumannii strain Ab-C102]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCCTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCCCTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCAGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ACGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACATCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTCATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M511

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36