Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IOD14_RS37270 Genome accession   NZ_CP063808
Coordinates   8305621..8306301 (-) Length   226 a.a.
NCBI ID   WP_020136160.1    Uniprot ID   A0ABU2VFT8
Organism   Streptomyces sp. A2-16     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8300621..8311301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS37260 (IOD14_37260) - 8303055..8304104 (+) 1050 WP_123989228.1 hypothetical protein -
  IOD14_RS37265 (IOD14_37265) clpX 8304174..8305460 (-) 1287 WP_123989229.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  IOD14_RS37270 (IOD14_37270) clpP 8305621..8306301 (-) 681 WP_020136160.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS37275 (IOD14_37275) clpP 8306372..8306977 (-) 606 WP_174269302.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS37280 (IOD14_37280) tig 8307306..8308700 (-) 1395 WP_123989231.1 trigger factor -
  IOD14_RS37295 (IOD14_37295) - 8309743..8309937 (-) 195 WP_020136157.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24991.42 Da        Isoelectric Point: 4.6426

>NTDB_id=440916 IOD14_RS37270 WP_020136160.1 8305621..8306301(-) (clpP) [Streptomyces sp. A2-16]
MNDFPGSGLYARTEAEYTGPRAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDALAYGLIDQIISTRKMNNAAVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=440916 IOD14_RS37270 WP_020136160.1 8305621..8306301(-) (clpP) [Streptomyces sp. A2-16]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACCGAGGCCGAGTACACCGGCCCGCGTGCCGAGTCCCGCTATGT
GATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACCATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGTCAGGCCGCCTCGGCCGCCGCCATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGTCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGACGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376