Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IOD14_RS37275 Genome accession   NZ_CP063808
Coordinates   8306372..8306977 (-) Length   201 a.a.
NCBI ID   WP_174269302.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8301372..8311977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS37260 (IOD14_37260) - 8303055..8304104 (+) 1050 WP_123989228.1 hypothetical protein -
  IOD14_RS37265 (IOD14_37265) clpX 8304174..8305460 (-) 1287 WP_123989229.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  IOD14_RS37270 (IOD14_37270) clpP 8305621..8306301 (-) 681 WP_020136160.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS37275 (IOD14_37275) clpP 8306372..8306977 (-) 606 WP_174269302.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS37280 (IOD14_37280) tig 8307306..8308700 (-) 1395 WP_123989231.1 trigger factor -
  IOD14_RS37295 (IOD14_37295) - 8309743..8309937 (-) 195 WP_020136157.1 hypothetical protein -
  IOD14_RS37300 (IOD14_37300) - 8310303..8311430 (+) 1128 WP_212672616.1 acyltransferase family protein -
  IOD14_RS37305 (IOD14_37305) - 8311427..8311885 (-) 459 WP_249126167.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21330.21 Da        Isoelectric Point: 4.8122

>NTDB_id=440917 IOD14_RS37275 WP_174269302.1 8306372..8306977(-) (clpP) [Streptomyces sp. A2-16]
MPSAAGEPSIGGGLGDHVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTME
QITRDSDRDRWFDAFEAKEYGLIDDVIATAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=440917 IOD14_RS37275 WP_174269302.1 8306372..8306977(-) (clpP) [Streptomyces sp. A2-16]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGGCTCGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCGGG
CAAGCGCTTCGCGCTTCCCAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGACGATGGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGAT
CGCCACGGCCGCCGGAATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

85.075

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.396

90.547

0.493
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.542

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.542

0.483
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus pneumoniae D39

51.724

86.567

0.448
  clpP Streptococcus pneumoniae Rx1

51.724

86.567

0.448
  clpP Streptococcus pneumoniae R6

51.724

86.567

0.448
  clpP Streptococcus pneumoniae TIGR4

51.724

86.567

0.448
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443