Detailed information NTG0440889

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: IOD14_RS25025
• Genome accession: NZ_CP063808
• Coordinates: 5583758..5584381 (+)
• Length: 207 a.a.
• NCBI ID: WP_123987055.1
• Uniprot ID: -
• Organism: Streptomyces sp. A2-16
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5578758..5589381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOD14_RS25005 (IOD14_25005)	-	5579118..5580779 (+)	1662	WP_212671576.1	ATP-binding protein	-
IOD14_RS25010 (IOD14_25010)	-	5580863..5581762 (+)	900	WP_123987052.1	SGNH/GDSL hydrolase family protein	-
IOD14_RS25015 (IOD14_25015)	-	5581817..5582299 (-)	483	WP_123987053.1	VOC family protein	-
IOD14_RS25020 (IOD14_25020)	-	5582423..5583634 (+)	1212	WP_212671577.1	epoxide hydrolase family protein	-
IOD14_RS25025 (IOD14_25025)	clpP	5583758..5584381 (+)	624	WP_123987055.1	ATP-dependent Clp protease proteolytic subunit	Regulator
IOD14_RS25030 (IOD14_25030)	clpP	5584383..5584985 (+)	603	WP_123987056.1	ATP-dependent Clp protease proteolytic subunit	Regulator
IOD14_RS25035 (IOD14_25035)	-	5585001..5585426 (-)	426	WP_123987057.1	helix-turn-helix transcriptional regulator	-
IOD14_RS25040 (IOD14_25040)	-	5585516..5586295 (+)	780	WP_123987058.1	class I SAM-dependent methyltransferase	-
IOD14_RS25045 (IOD14_25045)	-	5586516..5587412 (+)	897	WP_123987059.1	RNA polymerase sigma factor SigF	-
IOD14_RS25050 (IOD14_25050)	-	5587555..5588013 (-)	459	WP_123987060.1	ATP-binding protein	-
IOD14_RS25055 (IOD14_25055)	-	5588110..5589360 (-)	1251	WP_123987061.1	DUF6777 domain-containing protein	-

Sequence

Protein

• Length: 207 a.a.
• Molecular weight: 22452.41 Da
• Isoelectric Point: 4.6735

>NTDB_id=440889 IOD14_RS25025 WP_123987055.1 5583758..5584381(+) (clpP) [Streptomyces sp. A2-16]
MTSIRAEEGDTPPTRFDDQLAAQLLAQRIVLLGTQVDEVSANRICSQLLVLSAEDPRTDISLCINSPGGSVYAGLAIYDT
MRLIPNDVSTLAMGFAASMGQFLLCGGAPGKRYALPNARIMMHQGSAGIGGTTADIEIQAENLEHSKRTMERLLAENTGQ
TPETIAHDGDRDRWFTAEEAREYGMVDRVLESLADVRPAASRRRMGL

Nucleotide

• Length: 624 bp

>NTDB_id=440889 IOD14_RS25025 WP_123987055.1 5583758..5584381(+) (clpP) [Streptomyces sp. A2-16]
ATGACTTCCATCCGGGCCGAGGAGGGCGACACCCCTCCCACCCGCTTCGACGACCAACTGGCCGCCCAGCTCCTCGCCCA
GCGCATCGTGCTGCTGGGCACCCAGGTCGACGAGGTCTCCGCCAACCGGATCTGCTCGCAGCTGCTGGTCCTGTCCGCGG
AGGACCCCCGCACCGACATCAGCCTGTGCATCAACAGCCCGGGCGGCTCGGTGTACGCGGGACTCGCGATCTACGACACG
ATGCGGCTGATCCCGAACGACGTCTCGACGCTCGCCATGGGCTTCGCGGCGAGCATGGGCCAGTTCCTGCTCTGCGGCGG
CGCACCCGGCAAGCGGTACGCCCTGCCGAACGCGCGGATCATGATGCACCAGGGCTCCGCGGGCATCGGCGGCACCACCG
CCGACATCGAGATCCAGGCGGAGAACCTGGAGCACAGCAAGCGGACCATGGAGCGTCTCCTCGCCGAGAACACGGGCCAG
ACACCGGAGACGATCGCCCACGACGGCGACCGCGACCGCTGGTTCACGGCCGAGGAGGCCAGGGAGTACGGCATGGTGGA
CCGGGTCCTGGAGTCCCTCGCGGACGTCCGCCCGGCCGCCTCCAGGCGACGGATGGGGCTCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (19-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	50.562	85.99	0.435
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.711	83.575	0.415
clpP	Streptococcus pneumoniae R6	46.821	83.575	0.391
clpP	Streptococcus pneumoniae TIGR4	46.821	83.575	0.391
clpP	Streptococcus pneumoniae D39	46.821	83.575	0.391
clpP	Streptococcus pneumoniae Rx1	46.821	83.575	0.391
clpP	Streptococcus mutans UA159	45.714	84.541	0.386
clpP	Lactococcus lactis subsp. cremoris KW2	45.143	84.541	0.382
clpP	Streptococcus pyogenes JRS4	45.143	84.541	0.382
clpP	Streptococcus pyogenes MGAS315	45.143	84.541	0.382
clpP	Streptococcus thermophilus LMG 18311	45.087	83.575	0.377
clpP	Streptococcus thermophilus LMD-9	45.087	83.575	0.377
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.571	84.541	0.377