Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   IOD14_RS25030 Genome accession   NZ_CP063808
Coordinates   5584383..5584985 (+) Length   200 a.a.
NCBI ID   WP_123987056.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5579383..5589985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS25010 (IOD14_25010) - 5580863..5581762 (+) 900 WP_123987052.1 SGNH/GDSL hydrolase family protein -
  IOD14_RS25015 (IOD14_25015) - 5581817..5582299 (-) 483 WP_123987053.1 VOC family protein -
  IOD14_RS25020 (IOD14_25020) - 5582423..5583634 (+) 1212 WP_212671577.1 epoxide hydrolase family protein -
  IOD14_RS25025 (IOD14_25025) clpP 5583758..5584381 (+) 624 WP_123987055.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS25030 (IOD14_25030) clpP 5584383..5584985 (+) 603 WP_123987056.1 ATP-dependent Clp protease proteolytic subunit Regulator
  IOD14_RS25035 (IOD14_25035) - 5585001..5585426 (-) 426 WP_123987057.1 helix-turn-helix transcriptional regulator -
  IOD14_RS25040 (IOD14_25040) - 5585516..5586295 (+) 780 WP_123987058.1 class I SAM-dependent methyltransferase -
  IOD14_RS25045 (IOD14_25045) - 5586516..5587412 (+) 897 WP_123987059.1 RNA polymerase sigma factor SigF -
  IOD14_RS25050 (IOD14_25050) - 5587555..5588013 (-) 459 WP_123987060.1 ATP-binding protein -
  IOD14_RS25055 (IOD14_25055) - 5588110..5589360 (-) 1251 WP_123987061.1 DUF6777 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21560.50 Da        Isoelectric Point: 5.0429

>NTDB_id=440890 IOD14_RS25030 WP_123987056.1 5584383..5584985(+) (clpP) [Streptomyces sp. A2-16]
MANYTIPYVVERTAHGERSSDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESAAPENEISIYINSPGGSFTSLMAIY
DTMTYVQAPISTLCVGQAASTAAVLLAGGDPGRRLVLEHARVLLGQPASGGNRGAISDLALQAKEMVRIRSQVEEVLARH
THHDVATLRADMDRDKVFTAEEAVAYGLADEVVSRRLVTV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=440890 IOD14_RS25030 WP_123987056.1 5584383..5584985(+) (clpP) [Streptomyces sp. A2-16]
ATGGCGAACTACACGATTCCGTACGTCGTCGAGCGGACCGCGCACGGCGAGCGCTCCTCCGACGTGTTCAGCCGCCTGCT
CTCGGAGCGGATCATCTTCCTCGGCACGGAGATCGACGACGGGGTCGCCAACGTCGTGATCGCGCAGCTCCTGCACCTGG
AGTCGGCGGCCCCGGAGAACGAGATCTCGATCTACATCAACTCGCCCGGCGGATCGTTCACCTCGCTCATGGCCATCTAC
GACACGATGACCTATGTGCAGGCGCCGATCTCCACGCTGTGCGTGGGACAGGCGGCCTCGACGGCGGCCGTTCTGCTGGC
CGGGGGCGATCCCGGCCGACGGCTCGTGCTGGAGCACGCGCGTGTGCTGCTCGGCCAGCCGGCCTCCGGCGGCAACCGCG
GCGCGATCTCCGACCTCGCCCTGCAGGCCAAGGAGATGGTCCGCATCCGCTCCCAGGTGGAGGAGGTGCTGGCCCGGCAC
ACCCACCACGACGTCGCGACCCTGCGCGCCGACATGGACCGCGACAAGGTGTTCACCGCCGAGGAGGCAGTGGCCTACGG
CCTGGCCGACGAGGTGGTGAGCCGGCGCCTCGTGACGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.09

94.5

0.445
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.316

95

0.44
  clpP Streptococcus pyogenes JRS4

38.624

94.5

0.365
  clpP Streptococcus pyogenes MGAS315

38.624

94.5

0.365
  clpP Streptococcus pneumoniae TIGR4

37.5

96

0.36
  clpP Streptococcus pneumoniae Rx1

37.5

96

0.36
  clpP Streptococcus pneumoniae D39

37.5

96

0.36
  clpP Streptococcus pneumoniae R6

37.5

96

0.36