Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HH196_RS05755 Genome accession   NZ_CP051666
Coordinates   1217365..1218600 (+) Length   411 a.a.
NCBI ID   WP_248276828.1    Uniprot ID   -
Organism   Marinobacterium sp. LSUCC0821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212365..1223600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH196_RS05730 (HH196_05730) nadC 1212861..1213700 (+) 840 WP_169451200.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HH196_RS05735 (HH196_05735) - 1214190..1214366 (+) 177 WP_169451201.1 hypothetical protein -
  HH196_RS05740 (HH196_05740) - 1214556..1214909 (-) 354 WP_169451202.1 hypothetical protein -
  HH196_RS11525 - 1215240..1215351 (-) 112 Protein_1113 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HH196_RS05750 (HH196_05750) pilB 1215626..1217353 (+) 1728 WP_169451203.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HH196_RS05755 (HH196_05755) pilC 1217365..1218600 (+) 1236 WP_248276828.1 type II secretion system F family protein Machinery gene
  HH196_RS05760 (HH196_05760) yacG 1218665..1218871 (-) 207 WP_169451204.1 DNA gyrase inhibitor YacG -
  HH196_RS05765 (HH196_05765) coaE 1218873..1219469 (-) 597 WP_169451205.1 dephospho-CoA kinase -
  HH196_RS05770 (HH196_05770) mutT 1219462..1219869 (-) 408 WP_169451206.1 8-oxo-dGTP diphosphatase MutT -
  HH196_RS05775 (HH196_05775) argJ 1219895..1221109 (-) 1215 WP_169451207.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44518.18 Da        Isoelectric Point: 9.8238

>NTDB_id=440359 HH196_RS05755 WP_248276828.1 1217365..1218600(+) (pilC) [Marinobacterium sp. LSUCC0821]
MVSTKAKRKEQIYTFNWTGKDKAGNQSKGKVDARDISSAKVILRQQGILPQKISKESTSLFSAKTKPIKAVDIAFFTRQM
ATMMRSGVPLLQGLDIVAQGSEKDKLKKMIYDIRSEVNGGIDLSSALAKYPEHFDDLYVSLVAAGEQSGSLEAMLDRLAT
YKEKTEALKAKIKKALTYPTAVVIVGLLVTAILLVKVVPVFENVFGSFGAELPAFTLFVVNLSEIAQTYWFYALVAIIGG
GFLFKRQMVKSQSFRESVERMSLKIPVIGGILHNAAIARFTRTLSTTFAAGVPLVQALESCAGASGNVVYRQSIMQIRNG
VSAGQSLKNAITMTGVYPMMVVQMVSIGEEAGSLDQMLDKVAEFYEAAVDNAVDNLSSLLEPLIMVVLGTLVGGLVIAMY
LPIFQLGNVVG

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=440359 HH196_RS05755 WP_248276828.1 1217365..1218600(+) (pilC) [Marinobacterium sp. LSUCC0821]
TTGGTATCAACTAAAGCGAAACGTAAAGAGCAGATCTATACCTTTAATTGGACCGGTAAAGACAAGGCCGGCAACCAGAG
CAAAGGCAAGGTGGATGCTCGGGACATCTCAAGCGCAAAGGTCATTCTGCGCCAGCAAGGGATATTGCCCCAGAAGATCA
GCAAAGAGAGTACATCGCTATTTTCTGCCAAAACCAAGCCTATAAAAGCTGTAGATATCGCCTTCTTTACACGCCAGATG
GCTACTATGATGCGCTCTGGGGTACCGCTTCTTCAGGGGTTAGATATCGTCGCCCAAGGGAGCGAAAAAGATAAGCTTAA
GAAGATGATTTACGATATACGCTCCGAGGTAAACGGCGGTATCGACCTATCTTCAGCGCTAGCCAAATATCCAGAGCACT
TTGATGACCTCTATGTTTCATTAGTCGCGGCGGGTGAGCAGTCTGGTTCTTTGGAGGCTATGTTAGACCGACTCGCAACA
TACAAAGAGAAGACCGAAGCACTTAAAGCAAAAATTAAGAAAGCGCTCACCTACCCTACAGCAGTCGTTATCGTTGGCCT
ACTAGTTACAGCTATTCTTCTGGTGAAAGTCGTACCAGTATTTGAAAATGTCTTTGGTAGCTTTGGCGCAGAGTTACCTG
CATTTACACTATTTGTCGTCAATCTCTCAGAAATTGCACAAACCTATTGGTTCTATGCTCTAGTGGCGATTATTGGTGGT
GGGTTCCTATTTAAACGGCAAATGGTGAAGTCACAGAGTTTTAGAGAGTCTGTTGAGCGCATGAGCCTAAAGATCCCAGT
GATCGGTGGCATCTTACACAATGCAGCAATCGCCCGCTTTACCAGGACACTCTCCACCACCTTTGCGGCAGGTGTACCAC
TGGTCCAGGCCCTTGAGTCCTGTGCCGGAGCATCAGGCAATGTGGTCTATCGCCAATCGATTATGCAGATTCGTAATGGT
GTATCAGCGGGCCAATCACTTAAGAACGCAATCACCATGACAGGCGTCTATCCGATGATGGTAGTGCAGATGGTATCTAT
AGGTGAAGAAGCTGGCTCACTTGATCAGATGTTGGATAAGGTGGCTGAGTTCTATGAAGCGGCGGTAGATAACGCCGTGG
ACAATCTATCCAGCCTCCTAGAGCCCCTTATCATGGTGGTACTGGGAACCTTGGTTGGTGGACTCGTTATTGCGATGTAT
CTTCCTATCTTCCAACTAGGCAATGTAGTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

96.35

0.552
  pilC Acinetobacter baylyi ADP1

52.567

99.513

0.523
  pilC Legionella pneumophila strain ERS1305867

52.228

98.297

0.513
  pilC Acinetobacter baumannii D1279779

52.099

98.54

0.513
  pilC Vibrio cholerae strain A1552

44.01

99.513

0.438
  pilC Vibrio campbellii strain DS40M4

43.069

98.297

0.423
  pilG Neisseria gonorrhoeae MS11

42.079

98.297

0.414
  pilG Neisseria meningitidis 44/76-A

41.832

98.297

0.411