Detailed information NTG0439654

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG575_RS00200
• Genome accession: NZ_CP051540
• Coordinates: 36506..37561 (+)
• Length: 351 a.a.
• NCBI ID: WP_202249204.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31506..42561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG575_RS00170 (HG575_00170)	-	31915..32328 (+)	414	WP_001023008.1	universal stress protein	-
HG575_RS00175 (HG575_00175)	-	32355..32630 (+)	276	WP_108264689.1	ATP-dependent Clp protease adaptor ClpS	-
HG575_RS00180 (HG575_00180)	-	32630..34855 (+)	2226	WP_202248340.1	ATP-dependent Clp protease ATP-binding subunit	-
HG575_RS00185 (HG575_00185)	panD	34845..35198 (+)	354	WP_202248342.1	aspartate 1-decarboxylase	-
HG575_RS00190 (HG575_00190)	-	35201..35503 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG575_RS00195 (HG575_00195)	-	35503..36498 (+)	996	WP_202249206.1	PDZ domain-containing protein	-
HG575_RS00200 (HG575_00200)	comB6	36506..37561 (+)	1056	WP_202249204.1	P-type conjugative transfer protein TrbL	Machinery gene
HG575_RS00205 (HG575_00205)	comB7	37577..37690 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG575_RS00210 (HG575_00210)	comB8	37687..38430 (+)	744	WP_202248344.1	virB8 family protein	Machinery gene
HG575_RS00215 (HG575_00215)	comB9	38430..39413 (+)	984	WP_202248346.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG575_RS00220 (HG575_00220)	comB10	39406..40542 (+)	1137	WP_202248348.1	DNA type IV secretion system protein ComB10	Machinery gene
HG575_RS00225 (HG575_00225)	-	40612..42024 (+)	1413	WP_202248350.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39893.85 Da
• Isoelectric Point: 8.8041

>NTDB_id=439654 HG575_RS00200 WP_202249204.1 36506..37561(+) (comB6) [Helicobacter pylori strain LIM-002]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSYSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439654 HG575_RS00200 WP_202249204.1 36506..37561(+) (comB6) [Helicobacter pylori strain LIM-002]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACTAATTTGAGCGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTTATTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963