Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HG420_RS04970 Genome accession   NZ_CP051518
Coordinates   978650..979039 (+) Length   129 a.a.
NCBI ID   WP_015082043.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 978650..986970 978650..979039 within 0


Gene organization within MGE regions


Location: 978650..986970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS04970 (HG420_04980) ssbB 978650..979039 (+) 390 WP_015082043.1 single-stranded DNA-binding protein Machinery gene
  HG420_RS04975 (HG420_04985) groES 979158..979442 (+) 285 WP_011675464.1 co-chaperone GroES -
  HG420_RS04980 (HG420_04990) groL 979529..981157 (+) 1629 WP_011675465.1 chaperonin GroEL -
  HG420_RS04985 (HG420_04995) - 981209..982021 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  HG420_RS04990 (HG420_05000) - 982211..983638 (-) 1428 WP_011675468.1 cell wall metabolism sensor histidine kinase WalK -
  HG420_RS04995 (HG420_05005) yycF 983631..984332 (-) 702 WP_003131580.1 response regulator YycF -
  HG420_RS05000 (HG420_05010) tmk 984510..985145 (+) 636 WP_015082045.1 dTMP kinase -
  HG420_RS05005 (HG420_05015) - 985278..986138 (+) 861 WP_011675470.1 DNA polymerase III subunit delta' -
  HG420_RS05010 (HG420_05020) - 986188..986970 (+) 783 WP_015082046.1 stage 0 sporulation family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14683.78 Da        Isoelectric Point: 6.9865

>NTDB_id=439468 HG420_RS04970 WP_015082043.1 978650..979039(+) (ssbB) [Lactococcus cremoris strain F]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAINRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YSDKNEQKHCITEILGLSYDLLESRATLALRESAINFEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=439468 HG420_RS04970 WP_015082043.1 978650..979039(+) (ssbB) [Lactococcus cremoris strain F]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAATCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATTCTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTATAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

95.349

100

0.953
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

55.385

100

0.558