Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HC660_RS09150 Genome accession   NZ_CP051464
Coordinates   1767436..1768686 (+) Length   416 a.a.
NCBI ID   WP_029441276.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1762436..1773686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS09120 (HC660_17500) - 1762528..1763814 (+) 1287 WP_168747866.1 pitrilysin family protein -
  HC660_RS09125 (HC660_17510) - 1763867..1764595 (+) 729 WP_168747868.1 SDR family oxidoreductase -
  HC660_RS09130 (HC660_17520) - 1764675..1764932 (+) 258 WP_029441274.1 DUF3243 domain-containing protein -
  HC660_RS09135 (HC660_17530) - 1765062..1765853 (+) 792 WP_168747870.1 YmfK family protein -
  HC660_RS09140 (HC660_17540) - 1765920..1766786 (+) 867 WP_244956500.1 RodZ family helix-turn-helix domain-containing protein -
  HC660_RS09145 (HC660_17550) pgsA 1766836..1767417 (+) 582 WP_168747873.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HC660_RS09150 (HC660_17560) cinA 1767436..1768686 (+) 1251 WP_029441276.1 competence/damage-inducible protein A Machinery gene
  HC660_RS09155 (HC660_17570) recA 1768859..1769905 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  HC660_RS09160 (HC660_17580) - 1770079..1771257 (+) 1179 WP_168747875.1 serine hydrolase domain-containing protein -
  HC660_RS09165 (HC660_17590) rny 1771544..1773106 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45441.71 Da        Isoelectric Point: 5.1421

>NTDB_id=438481 HC660_RS09150 WP_029441276.1 1767436..1768686(+) (cinA) [Bacillus mojavensis strain UCMB5075]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEQCASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=438481 HC660_RS09150 WP_029441276.1 1767436..1768686(+) (cinA) [Bacillus mojavensis strain UCMB5075]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTAGGTTCAGAACTCTTGCTTGGTCAGATTGCCAATACAAATGCTCA
ATTTATCAGCAAGCAGTTGGCAGAAATCGGAGTAAACGTATTCTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCTAATGTACTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAAGCGCTTGTCATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCACGCTTTTATATGCTTCTTCCCGGACCGCCGAGTGAATTG
CGTCCGATGTTTGAAAATGAGGCTAAACCGCTTCTTCTTAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACGGTTCT
TCGCTTCTTCGGTATCGGCGAATCTCAGCTAGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CTCCATTGGCAGCGGATGGAGAGGTGACGCTGCGCCTGACAGCGAAACATGCTGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTCTTCTATGGCTATGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGATCTTAGCGGCGCTTCAGCGTTGTTTTCCGGCGGCGTCGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACACTGGACCGTTTCGGCGCAGTCAGCGAGCAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTCTGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACAGGAATTAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385