Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HEP73_RS05525 Genome accession   NZ_CP051189
Coordinates   1305892..1307151 (-) Length   419 a.a.
NCBI ID   WP_185822426.1    Uniprot ID   A0A7G7STW6
Organism   Xanthomonas sp. GW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300892..1312151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS22575 (HEP73_01080) - 1301782..1302210 (+) 429 WP_255423680.1 hypothetical protein -
  HEP73_RS05505 (HEP73_01081) - 1302225..1302902 (+) 678 WP_046978044.1 response regulator transcription factor -
  HEP73_RS05510 (HEP73_01082) - 1302895..1304241 (+) 1347 WP_185822424.1 HAMP domain-containing sensor histidine kinase -
  HEP73_RS05515 (HEP73_01083) coaE 1304388..1305008 (-) 621 WP_185822425.1 dephospho-CoA kinase -
  HEP73_RS05520 (HEP73_01084) - 1305022..1305885 (-) 864 WP_046978035.1 A24 family peptidase -
  HEP73_RS05525 (HEP73_01085) pilC 1305892..1307151 (-) 1260 WP_185822426.1 type II secretion system F family protein Machinery gene
  HEP73_RS05530 (HEP73_01086) pilA/pilAI 1307537..1307929 (+) 393 WP_185822427.1 pilin Machinery gene
  HEP73_RS05535 - 1308072..1308455 (+) 384 WP_276568899.1 pilin -
  HEP73_RS05540 (HEP73_01087) - 1308508..1310349 (+) 1842 WP_185822428.1 hypothetical protein -
  HEP73_RS05545 (HEP73_01088) - 1310612..1311778 (-) 1167 WP_185822429.1 glycosyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45724.95 Da        Isoelectric Point: 10.1073

>NTDB_id=436728 HEP73_RS05525 WP_185822426.1 1305892..1307151(-) (pilC) [Xanthomonas sp. GW]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSTGSKITPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYESISKHPIQFDELYRNLVKAGEGAGVLE
TVLETVAAYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASKFMVAYWWV
LLIVIIGSIGGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFARTLAVTFRAGVPLVEALDIVAGATGNSVYEK
SVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=436728 HEP73_RS05525 WP_185822426.1 1305892..1307151(-) (pilC) [Xanthomonas sp. GW]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCCCGCAATACCAGCCAGCAGGTGCCGTTTGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAAAATGCCAATTTGTTACGGGCAGAATTGCGCCGCC
AGGGCATTACGCCATCGGTGGTCAAGCCGAAGCCCAAACCTCTCTTTGGCTCTACTGGCAGCAAAATCACTCCCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTGCCGATCGTGGGATCGCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAAAAAATGGTGGATCAGATCCGCACTGATATCGAAGGCGGCTCATCGCTCTATGAAT
CAATCAGCAAGCACCCGATCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCAGGCGAAGGTGCCGGCGTGCTCGAA
ACCGTACTGGAGACGGTTGCTGCCTACAAGGAAAATATTGAAGCACTGAAGGGCAAAATCAAGAAGGCCTTGTTCTATCC
GGCCATGGTCATGGCGGTCGCGCTGCTTGTCAGCTCGATCCTGCTGGTTTGGGTGGTGCCGCAGTTCGAAGATGTGTTCA
AGGGCTTTGGTGCAGAATTGCCGGCGTTCACTCAAATGATCGTTGCTGCTTCCAAGTTCATGGTCGCCTATTGGTGGGTA
CTGCTGATTGTCATCATTGGAAGCATCGGCGGCTTCATCTTTGCCTACAAGCGCTCGCCATCAATGCAACACGGCATGGA
CCGCCTGATCCTGAAGGTGCCGATCATCGGTCAGATCATGCACAACAGCTCGGTGGCGCGCTTCGCGCGAACGCTCGCTG
TGACCTTTCGCGCCGGCGTGCCATTGGTGGAAGCGCTGGACATCGTCGCGGGCGCCACTGGCAATAGCGTGTACGAGAAA
TCCGTATTGCGCATGCGAGACGACGTCTCGGTAGGCTACCCGGTCAACGTAGCGATGAAGCAAACCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTGGATGCGTTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTGATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7STW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baumannii D1279779

51.471

97.375

0.501
  pilC Legionella pneumophila strain ERS1305867

51.98

96.42

0.501
  pilC Acinetobacter baylyi ADP1

50.98

97.375

0.496
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

41.728

96.659

0.403
  pilC Vibrio campbellii strain DS40M4

39.85

95.227

0.379