Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HCM98_RS19880 Genome accession   NZ_CP051013
Coordinates   3835244..3836482 (-) Length   412 a.a.
NCBI ID   WP_029439570.1    Uniprot ID   -
Organism   Bacillus tropicus strain LM1212-DB     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3830244..3841482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS19860 (HCM98_19885) rny 3831035..3832597 (-) 1563 WP_000204911.1 ribonuclease Y -
  HCM98_RS19865 (HCM98_19890) - 3833079..3833501 (-) 423 Protein_3899 DNA recombination/repair protein RecA -
  HCM98_RS19870 (HCM98_19895) - 3833770..3834393 (-) 624 WP_029439569.1 hypothetical protein -
  HCM98_RS19875 (HCM98_19900) recA 3834491..3835099 (-) 609 Protein_3901 recombinase RecA -
  HCM98_RS19880 (HCM98_19905) cinA 3835244..3836482 (-) 1239 WP_029439570.1 competence/damage-inducible protein CinA Machinery gene
  HCM98_RS19885 (HCM98_19910) pgsA 3836503..3837081 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HCM98_RS19890 (HCM98_19915) - 3837145..3838056 (-) 912 WP_029439571.1 helix-turn-helix domain-containing protein -
  HCM98_RS19895 (HCM98_19920) - 3838078..3838863 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  HCM98_RS19900 (HCM98_19925) - 3839003..3839251 (-) 249 WP_029439572.1 DUF3243 domain-containing protein -
  HCM98_RS19905 (HCM98_19930) - 3839327..3840040 (-) 714 WP_029439573.1 SDR family oxidoreductase -
  HCM98_RS19910 (HCM98_19935) - 3840144..3841430 (-) 1287 WP_029439574.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45494.83 Da        Isoelectric Point: 5.4733

>NTDB_id=436071 HCM98_RS19880 WP_029439570.1 3835244..3836482(-) (cinA) [Bacillus tropicus strain LM1212-DB]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDRQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=436071 HCM98_RS19880 WP_029439570.1 3835244..3836482(-) (cinA) [Bacillus tropicus strain LM1212-DB]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGAGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATAGACAAACGAACCCAACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCAAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAACATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCATGTGCAGAAAGCTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGCTATCTTGCTGAAAATGTTAGAGGATTATTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAACTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.733

100

0.485
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.478
  cinA Streptococcus pneumoniae R6

47.017

100

0.478
  cinA Streptococcus pneumoniae D39

46.778

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.778

100

0.476
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.799

91.748

0.383