Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOB43_RS10980 Genome accession   NZ_CP050992
Coordinates   2319968..2321047 (-) Length   359 a.a.
NCBI ID   WP_168227744.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_635     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2314968..2326047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB43_RS10965 (FOB43_10965) - 2315645..2316922 (+) 1278 WP_168227743.1 hypothetical protein -
  FOB43_RS10970 (FOB43_10970) topA 2317020..2319329 (-) 2310 WP_043618220.1 type I DNA topoisomerase -
  FOB43_RS10975 (FOB43_10975) - 2319480..2319938 (-) 459 WP_011137814.1 DUF494 domain-containing protein -
  FOB43_RS10980 (FOB43_10980) dprA 2319968..2321047 (-) 1080 WP_168227744.1 DNA-processing protein DprA Machinery gene
  FOB43_RS10985 (FOB43_10985) - 2321044..2322081 (-) 1038 WP_081572912.1 LysM domain-containing protein -
  FOB43_RS10990 (FOB43_10990) def 2322208..2322711 (+) 504 WP_011137811.1 peptide deformylase -
  FOB43_RS10995 (FOB43_10995) fmt 2322786..2323709 (+) 924 WP_152638517.1 methionyl-tRNA formyltransferase -
  FOB43_RS11000 (FOB43_11000) htpX 2323752..2324606 (+) 855 WP_011137809.1 zinc metalloprotease HtpX -
  FOB43_RS11005 (FOB43_11005) rsmB 2324673..2325923 (+) 1251 WP_043618214.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37166.64 Da        Isoelectric Point: 6.2323

>NTDB_id=435796 FOB43_RS10980 WP_168227744.1 2319968..2321047(-) (dprA) [Chromobacterium violaceum strain FDAARGOS_635]
MSGAPQAWLTLALTPGIGPVGFLKLIDAFGSAEAAATARSAQTEKLVGREAAEALQAGAAAESVQAALAWAESDGCHLIT
LLDADYPAQLAEAASPPPLLFARGRRELLARTMLAVVGSRAATQQGKRNAEDFASALAAHGYTIVSGLASGIDAAAHQGA
LAHPASTVAVIGTGIDRVYPASNRQLAHRVAEHGLILSEFPLGMGPLPGHFPRRNRIIAGLARGCLVVEAGIASGSLISA
RLAMENNRDVMAIPGSIHNAQARGCHRLIKDGARLVESVDDVLDEIGRLPAPPPPILRQEEPEAPPLLSSMGWEPVLADA
LAGTLGLTPGEVYAMLLELELAGRVASLPGGRFQRLAQL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=435796 FOB43_RS10980 WP_168227744.1 2319968..2321047(-) (dprA) [Chromobacterium violaceum strain FDAARGOS_635]
ATGAGCGGCGCCCCGCAAGCCTGGCTGACGCTGGCGCTGACCCCCGGCATCGGCCCGGTCGGCTTCCTGAAGCTGATAGA
CGCGTTCGGCTCGGCCGAGGCCGCGGCCACCGCCCGTTCCGCCCAGACCGAGAAGCTGGTGGGCCGCGAGGCGGCCGAAG
CGCTGCAGGCCGGCGCGGCGGCGGAATCGGTCCAGGCCGCGCTCGCCTGGGCCGAAAGCGACGGCTGCCACTTGATCACG
CTGCTCGACGCCGACTACCCGGCGCAGCTGGCCGAAGCCGCGTCGCCGCCGCCGCTGCTGTTCGCGCGCGGCCGGCGCGA
GCTGCTGGCGCGGACCATGCTGGCCGTGGTCGGCAGCCGGGCCGCCACCCAGCAGGGCAAGCGCAACGCCGAGGACTTCG
CGTCGGCGCTGGCCGCCCACGGCTACACCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCACCAGGGCGCG
CTCGCGCATCCAGCCTCCACCGTCGCGGTGATCGGCACCGGCATCGACCGCGTCTACCCGGCGTCCAACCGCCAGCTCGC
CCACCGCGTCGCCGAGCACGGACTGATCCTGTCCGAGTTCCCGCTGGGCATGGGCCCGCTGCCCGGCCACTTCCCGCGCC
GCAACCGCATCATCGCCGGCCTGGCCCGCGGCTGCCTGGTGGTGGAGGCCGGCATCGCGTCCGGCTCGCTGATCAGCGCG
CGGCTGGCGATGGAGAACAACCGCGACGTGATGGCGATACCGGGCAGCATCCACAACGCCCAGGCACGCGGCTGCCACCG
GCTGATCAAGGATGGCGCGCGGCTGGTGGAGAGCGTTGACGACGTGCTGGACGAGATCGGCCGGCTGCCGGCGCCGCCGC
CGCCCATCCTCCGGCAAGAAGAGCCGGAAGCGCCGCCGCTGTTGAGCAGCATGGGTTGGGAGCCGGTGCTGGCGGACGCG
CTGGCCGGGACGCTCGGGTTGACTCCCGGGGAGGTTTACGCGATGCTGCTCGAACTGGAACTGGCCGGCCGCGTGGCCAG
CCTGCCGGGCGGCCGCTTCCAGCGGCTCGCACAACTCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(291-351)

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

46.907

100

0.507
  dprA Neisseria meningitidis strain C311

46.41

100

0.504
  dprA Neisseria meningitidis MC58

46.41

100

0.504
  dprA Neisseria gonorrhoeae MS11

46.392

100

0.501
  dprA Vibrio campbellii strain DS40M4

41.436

100

0.418
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.889

100

0.401
  dprA Thermus thermophilus HB27

40.058

96.657

0.387
  dprA Legionella pneumophila strain ERS1305867

46.309

83.008

0.384
  dprA Vibrio cholerae strain A1552

36.986

100

0.376
  dprA Acinetobacter baylyi ADP1

36.111

100

0.362