Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HED61_RS02550 Genome accession   NZ_CP050816
Coordinates   535594..536832 (-) Length   412 a.a.
NCBI ID   WP_003128983.1    Uniprot ID   A0A1V8Z0L9
Organism   Enterococcus gallinarum strain EG81     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530594..541832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED61_RS02530 (HED61_02530) pgmB 531089..531739 (+) 651 WP_003128987.1 beta-phosphoglucomutase -
  HED61_RS02535 (HED61_02535) treR 531793..532509 (+) 717 WP_003128986.1 trehalose operon repressor -
  HED61_RS02540 (HED61_02540) rny 532618..534192 (-) 1575 WP_029487351.1 ribonuclease Y -
  HED61_RS02545 (HED61_02545) recA 534444..535490 (-) 1047 WP_003128984.1 recombinase RecA Machinery gene
  HED61_RS02550 (HED61_02550) cinA 535594..536832 (-) 1239 WP_003128983.1 competence/damage-inducible protein A Machinery gene
  HED61_RS02555 (HED61_02555) pgsA 536915..537496 (-) 582 WP_005473048.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HED61_RS02560 (HED61_02560) - 537608..538513 (-) 906 WP_003128979.1 RodZ domain-containing protein -
  HED61_RS02565 (HED61_02565) yfmH 538846..540144 (-) 1299 WP_103300716.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HED61_RS02570 (HED61_02570) yfmF 540137..541405 (-) 1269 WP_003128975.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45131.39 Da        Isoelectric Point: 4.8009

>NTDB_id=434989 HED61_RS02550 WP_003128983.1 535594..536832(-) (cinA) [Enterococcus gallinarum strain EG81]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIEVYYHSVVGDNPKRLEELVTLAENRSDLIVFCGGLGPTEDDLTKQI
VAQHVGQELVRDEAGYEQMLTFFKNGQRFMTENNLRQTLVFKDGTALPNATGLAIGIFYRTATAAYLLLPGPPSELKPMF
IQQARPILQTEFSSEEQLISRVLRFYGIGESALVTELADLIDSQKNPTVAPYAKPNEVTLRLTVKTTDESAGQAKLDELE
QQIQARVGEYFYGYGEHTSLAEVVVDMLKEKKKTVTAAESLTAGLFQATLGDISGVSRVFSGGYVTYAKETKSKMLGINE
DLLTAYGTVSKECAEAMALAAQAKEKADYALSFTGVAGPDELENQRPGTVWIALATNEGVKSKCYHFSRDRAYVRHSAVM
AGLDLLRKELLR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=434989 HED61_RS02550 WP_003128983.1 535594..536832(-) (cinA) [Enterococcus gallinarum strain EG81]
ATGAAGGCAGAGATTATTGCAGTAGGGACCGAATTGCTTTTGGGACAGGTGGTGAATACCAATGCAACTTTCTTATCAGA
AGAATTAGCTAGTTTAGGAATCGAAGTTTACTATCATAGTGTTGTAGGGGACAATCCAAAGCGTTTGGAAGAGCTAGTAA
CACTTGCCGAGAATCGCAGTGACTTGATCGTATTTTGCGGCGGTCTCGGACCTACAGAAGATGATTTAACCAAACAAATC
GTTGCACAGCATGTCGGTCAAGAGCTCGTTCGTGACGAAGCAGGGTATGAGCAAATGCTGACCTTTTTCAAAAATGGTCA
GCGTTTTATGACAGAAAATAATTTGAGACAGACGTTGGTATTCAAAGATGGTACAGCGTTACCTAATGCAACTGGGTTAG
CAATCGGTATCTTCTACCGAACAGCTACAGCGGCATATCTCCTGTTGCCTGGACCACCAAGTGAACTGAAACCTATGTTT
ATCCAACAAGCCCGTCCAATTTTGCAGACAGAGTTTTCATCAGAAGAACAGTTGATTTCTCGAGTATTGCGATTTTATGG
AATTGGAGAATCCGCACTAGTAACTGAACTTGCCGATCTAATTGATTCTCAGAAGAACCCAACGGTCGCACCGTACGCTA
AACCCAATGAAGTAACCTTGCGTTTGACGGTGAAAACTACGGATGAATCGGCAGGACAAGCCAAACTAGATGAATTAGAA
CAACAAATCCAAGCAAGAGTGGGCGAATATTTTTATGGATATGGAGAGCATACATCATTAGCTGAAGTAGTTGTTGATAT
GCTGAAAGAAAAGAAAAAAACTGTGACGGCTGCGGAGAGTTTGACAGCGGGACTCTTTCAAGCGACGCTGGGAGACATCT
CAGGCGTGTCCCGTGTATTTTCTGGTGGTTATGTGACTTATGCTAAAGAGACAAAAAGTAAGATGCTAGGAATCAATGAA
GACTTGCTAACAGCTTATGGAACTGTCAGCAAGGAATGTGCAGAAGCGATGGCGCTTGCTGCCCAAGCCAAAGAAAAAGC
GGATTATGCCCTTTCTTTTACCGGGGTAGCTGGACCAGATGAGCTTGAGAATCAACGCCCAGGAACGGTCTGGATTGCTT
TAGCAACCAATGAAGGTGTGAAAAGCAAGTGCTATCATTTTTCCAGAGATCGTGCATACGTTCGTCATAGTGCAGTAATG
GCAGGATTAGATCTATTACGTAAGGAATTGTTAAGATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8Z0L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.619

100

0.536
  cinA Streptococcus mitis NCTC 12261

52.143

100

0.532
  cinA Streptococcus pneumoniae TIGR4

52.143

100

0.532
  cinA Streptococcus pneumoniae D39

51.905

100

0.529
  cinA Streptococcus pneumoniae Rx1

51.905

100

0.529
  cinA Streptococcus pneumoniae R6

51.905

100

0.529
  cinA Streptococcus mutans UA159

51.084

100

0.515
  cinA Bacillus subtilis subsp. subtilis str. 168

47.188

99.272

0.468
  cinA Streptococcus suis isolate S10

42.995

100

0.432