Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GM240_RS17395 Genome accession   NZ_CP050509
Coordinates   3615231..3616463 (-) Length   410 a.a.
NCBI ID   WP_098175508.1    Uniprot ID   A0AAX0S4X9
Organism   Peribacillus butanolivorans strain KJ40     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3610231..3621463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS17375 (GM240_17420) spoVS 3610515..3610775 (-) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  GM240_RS17380 (GM240_17425) - 3610959..3611756 (-) 798 WP_053345394.1 TIGR00282 family metallophosphoesterase -
  GM240_RS17385 (GM240_17430) rny 3611920..3613479 (-) 1560 WP_053345393.1 ribonuclease Y -
  GM240_RS17390 (GM240_17435) recA 3613843..3614883 (-) 1041 WP_053345392.1 recombinase RecA Machinery gene
  GM240_RS17395 (GM240_17440) cinA 3615231..3616463 (-) 1233 WP_098175508.1 competence/damage-inducible protein A Machinery gene
  GM240_RS17400 (GM240_17445) pgsA 3616486..3617070 (-) 585 WP_053345391.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GM240_RS17405 (GM240_17450) - 3617251..3618153 (-) 903 WP_317629078.1 RodZ family helix-turn-helix domain-containing protein -
  GM240_RS17410 (GM240_17455) - 3618162..3618953 (-) 792 WP_053345389.1 DUF3388 domain-containing protein -
  GM240_RS17415 (GM240_17460) - 3619195..3619452 (-) 258 WP_190269995.1 DUF3243 domain-containing protein -
  GM240_RS17420 (GM240_17465) ymfI 3619533..3620258 (-) 726 WP_098175314.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44734.93 Da        Isoelectric Point: 5.0363

>NTDB_id=433564 GM240_RS17395 WP_098175508.1 3615231..3616463(-) (cinA) [Peribacillus butanolivorans strain KJ40]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGVNVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFEKRGRTMTENNKKQALVLEGSEVLANDHGMAPGMILAKSGITYMLLPGPPSEMEPMF
LSYGYGSIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILNRVGKFYYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVSYTNDAKSNVLGISDA
TISKNGVVSGECAMEMASNAREKFDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGATHFKELNLSGSRAQNRVRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=433564 GM240_RS17395 WP_098175508.1 3615231..3616463(-) (cinA) [Peribacillus butanolivorans strain KJ40]
ATGGATGCAGAAATCATTGCAGTAGGCTCTGAACTTCTTTTGGGACAAATTAATAACACAAATGGAAGATTTTTATCACA
ACAGTTTGCCGAAATGGGTGTCAATGTTTTTTACCATACTGTCGTCGGAGATAATGACCGACGATTACAACAAGCCATAG
AAATCGCAGAATCCCGGGCTAACTTGATTGTATTTACCGGTGGACTTGGGCCTACTAAAGATGATTTGACGAAGGAAACG
ATCGCTCGCCATATAGGAAAAAAACTCGTTTTTAATGATGAAGCACTTCAATCCATTGAAGCGTACTTTGAAAAACGCGG
CCGGACGATGACGGAGAACAACAAAAAGCAGGCTCTCGTCTTAGAAGGCAGCGAGGTCTTGGCAAACGATCATGGCATGG
CTCCGGGGATGATCTTGGCGAAATCCGGAATCACGTATATGTTGCTTCCTGGTCCTCCGAGTGAAATGGAACCAATGTTT
TTAAGCTATGGTTATGGATCGATTATGAATAAACTTGAAAAGCATGAACGGATCGACTCCAAGGTTCTACGGTTTTACGG
GATAGGGGAAGCTGAACTGGAAACAGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCCACAATCGCTCCACTGGCTG
CTGAAGGGGAAGTAACGTTAAGGATTACCGCTAAAGACTCTTCTAAAGAAAAATGTGAGGAGCTTATTTTAGAAGCGGAA
AAAGAAATTTTAAACAGGGTCGGCAAGTTTTATTATGGAAGTGATAATACTTCGCTCATAAAAGAACTTGTTAAAGAATT
AACGGTCCGAAAGCTTTCAATAGCGGCAGCGGAAAGCTTGACCGGTGGTATGTTTCAAGAGCAACTTACAACGATACCAG
GCGCCGGAAAAGTCTTCAAGGGCGGTATTGTCAGTTATACAAATGATGCGAAGTCGAATGTTTTGGGCATCAGTGACGCG
ACAATCTCGAAAAATGGCGTAGTCAGTGGTGAGTGTGCAATGGAAATGGCTTCTAATGCCCGGGAAAAGTTCGATGCGGA
TGTAGGTATCAGTTTTACTGGTGTTGCAGGGCCTGATGAACAAGAAGGCAAGCCAGTAGGTACGGTCTTCATTGGAATTT
CTTACCGTGATGGAGCCACTCACTTTAAAGAGTTGAATTTATCTGGAAGCAGGGCGCAAAACCGTGTTCGTAGCGTGAAG
TACGGCTGTCATTATTTATTAAGGGACTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.333

99.512

0.58
  cinA Streptococcus mitis SK321

45.476

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.238

100

0.463
  cinA Streptococcus pneumoniae Rx1

45

100

0.461
  cinA Streptococcus pneumoniae R6

45

100

0.461
  cinA Streptococcus pneumoniae D39

44.762

100

0.459
  cinA Streptococcus mutans UA159

44.226

99.268

0.439
  cinA Streptococcus suis isolate S10

38.596

97.317

0.376