Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EGM182_RS00960 Genome accession   NZ_CP050490
Coordinates   38080..39318 (+) Length   412 a.a.
NCBI ID   WP_118215700.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EGM182     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33080..44318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM182_RS00940 (EGM182_00950) yfmF 33297..34565 (+) 1269 WP_086293487.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EGM182_RS00945 (EGM182_00955) yfmH 34558..35856 (+) 1299 WP_074934338.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EGM182_RS00950 (EGM182_00960) - 36321..37223 (+) 903 WP_118215701.1 helix-turn-helix domain-containing protein -
  EGM182_RS00955 (EGM182_00965) pgsA 37356..37937 (+) 582 WP_034859101.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGM182_RS00960 (EGM182_00970) cinA 38080..39318 (+) 1239 WP_118215700.1 competence/damage-inducible protein A Machinery gene
  EGM182_RS00965 (EGM182_00975) recA 39421..40464 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  EGM182_RS00970 (EGM182_00980) - 40537..41838 (-) 1302 WP_118215887.1 ISL3 family transposase -
  EGM182_RS00975 (EGM182_00985) rny 42219..43793 (+) 1575 WP_005232891.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44841.00 Da        Isoelectric Point: 4.6005

>NTDB_id=433278 EGM182_RS00960 WP_118215700.1 38080..39318(+) (cinA) [Enterococcus casseliflavus strain EGM182]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADETQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVGLLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
ELLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSIQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=433278 EGM182_RS00960 WP_118215700.1 38080..39318(+) (cinA) [Enterococcus casseliflavus strain EGM182]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACAAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTGCTGTGCGGCGGCCTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGAATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACCGCAGACGAAACGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGGGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GAGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGATCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.594

100

0.517
  cinA Streptococcus mitis SK321

50.356

100

0.515
  cinA Streptococcus pneumoniae Rx1

50.356

100

0.515
  cinA Streptococcus pneumoniae R6

50.356

100

0.515
  cinA Streptococcus pneumoniae D39

50.356

100

0.515
  cinA Streptococcus mutans UA159

50.481

100

0.51
  cinA Streptococcus mitis NCTC 12261

49.881

100

0.51
  cinA Bacillus subtilis subsp. subtilis str. 168

45.232

99.272

0.449
  cinA Streptococcus suis isolate S10

42.788

100

0.432