Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HB764_RS15575 Genome accession   NZ_CP050478
Coordinates   3299728..3300837 (-) Length   369 a.a.
NCBI ID   WP_255957278.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3294728..3305837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS15545 (HB764_15440) hemF 3295258..3296175 (-) 918 WP_255957274.1 oxygen-dependent coproporphyrinogen oxidase -
  HB764_RS15550 (HB764_15445) - 3296210..3296767 (-) 558 WP_255957275.1 L-threonylcarbamoyladenylate synthase -
  HB764_RS15555 (HB764_15450) purE 3296967..3297452 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HB764_RS15560 (HB764_15455) - 3297457..3298590 (+) 1134 WP_255957276.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HB764_RS15565 (HB764_15460) - 3298654..3299223 (-) 570 WP_005535498.1 type I DNA topoisomerase -
  HB764_RS15570 (HB764_15465) - 3299246..3299725 (-) 480 WP_005429833.1 DUF494 family protein -
  HB764_RS15575 (HB764_15470) dprA 3299728..3300837 (-) 1110 WP_255957278.1 DNA-processing protein DprA Machinery gene
  HB764_RS15580 (HB764_15475) - 3300821..3301915 (-) 1095 WP_255957279.1 LysM peptidoglycan-binding domain-containing protein -
  HB764_RS15585 (HB764_15480) def 3302054..3302572 (+) 519 WP_005450979.1 peptide deformylase -
  HB764_RS15590 (HB764_15485) fmt 3302606..3303553 (+) 948 WP_005535506.1 methionyl-tRNA formyltransferase -
  HB764_RS15595 (HB764_15490) rsmB 3303635..3304918 (+) 1284 WP_005535508.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39333.96 Da        Isoelectric Point: 5.5790

>NTDB_id=433227 HB764_RS15575 WP_255957278.1 3299728..3300837(-) (dprA) [Vibrio campbellii strain LJC011]
MTPQNDIDLAAWLKLGCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLGQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQSGACLVQNSQEVLNEIQSLLDWSINQNLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=433227 HB764_RS15575 WP_255957278.1 3299728..3300837(-) (dprA) [Vibrio campbellii strain LJC011]
ATGACACCACAAAATGATATTGATCTCGCTGCCTGGTTAAAGCTTGGTTGTTTACCGGGCATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGCAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTGGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACGTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTAGGCAGCCGTAATGCCAGTGTGGATGGGTTACAACATGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTCACTAGTGGCTTAGCATTGGGTATTGATGGCCATGCTCAT
GATGGTGCGCTGTTGGCTGGCGGTAAAACCATCGCAGTGCTAGGTTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
AGGTTTGGGACAGCGAGTGGCCGAAAATGGAGCGCTTGTTTCTGAGTTTCGCCCTGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAGCGGGGCTTGTCTCGTACAAAATTCTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAACTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

98.103

100

0.981
  dprA Vibrio cholerae strain A1552

58.108

100

0.583
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.48
  dprA Haemophilus influenzae Rd KW20

44.54

94.309

0.42
  dprA Legionella pneumophila strain ERS1305867

46.809

89.16

0.417
  dprA Neisseria meningitidis strain C311

37.084

100

0.393
  dprA Neisseria meningitidis MC58

37.084

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.377