Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HMPREF0389_RS09175 Genome accession   NC_016630
Coordinates   1156963..1157229 (-) Length   88 a.a.
NCBI ID   WP_242821704.1    Uniprot ID   -
Organism   Filifactor alocis ATCC 35896     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1151963..1162229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0389_RS05070 (HMPREF0389_01711) - 1154716..1155102 (-) 387 WP_014262598.1 Dps family protein -
  HMPREF0389_RS05075 (HMPREF0389_01712) - 1155291..1155920 (-) 630 WP_014262297.1 HAD family hydrolase -
  HMPREF0389_RS05080 (HMPREF0389_01713) - 1155977..1156936 (-) 960 WP_242821703.1 nicotinamide-nucleotide amidohydrolase family protein -
  HMPREF0389_RS09175 cinA 1156963..1157229 (-) 267 WP_242821704.1 molybdopterin-binding protein Machinery gene
  HMPREF0389_RS05085 (HMPREF0389_01714) - 1157250..1159031 (-) 1782 WP_014262299.1 ABC transporter ATP-binding protein -
  HMPREF0389_RS05090 (HMPREF0389_01715) - 1159586..1159756 (-) 171 WP_014262300.1 DUF362 domain-containing protein -
  HMPREF0389_RS05095 (HMPREF0389_01716) - 1160933..1162204 (+) 1272 WP_014262301.1 Glu/Leu/Phe/Val dehydrogenase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9614.96 Da        Isoelectric Point: 4.3843

>NTDB_id=43212 HMPREF0389_RS09175 WP_242821704.1 1156963..1157229(-) (cinA) [Filifactor alocis ATCC 35896]
MNAEILCVGTELLHGDIVNTNAAFLSKELAKIGIDVHYQTVVGDNPKRMKEAYEIALNRADVIISTGGLGPTQDDITKEI
EQSILVYQ

Nucleotide


Download         Length: 267 bp        

>NTDB_id=43212 HMPREF0389_RS09175 WP_242821704.1 1156963..1157229(-) (cinA) [Filifactor alocis ATCC 35896]
ATGAATGCTGAAATACTGTGTGTGGGAACAGAATTGTTACATGGAGATATTGTCAATACAAATGCTGCATTTCTTTCAAA
AGAATTGGCAAAGATAGGGATAGATGTGCATTATCAGACAGTAGTTGGAGATAATCCGAAACGAATGAAAGAGGCATATG
AAATTGCGCTGAATCGAGCAGATGTTATCATTTCTACAGGAGGGCTTGGACCGACGCAGGATGATATTACCAAAGAAATT
GAGCAGAGTATTTTGGTTTACCAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.538

88.636

0.545
  cinA Streptococcus mitis NCTC 12261

60.759

89.773

0.545
  cinA Streptococcus mitis SK321

60.759

89.773

0.545
  cinA Streptococcus pneumoniae TIGR4

60.759

89.773

0.545
  cinA Streptococcus pneumoniae D39

59.494

89.773

0.534
  cinA Streptococcus pneumoniae Rx1

59.494

89.773

0.534
  cinA Streptococcus pneumoniae R6

59.494

89.773

0.534
  cinA Streptococcus mutans UA159

55.696

89.773

0.5
  cinA Streptococcus suis isolate S10

49.412

96.591

0.477

Multiple sequence alignment