Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB734_RS23620 Genome accession   NZ_CP050329
Coordinates   5094983..5096200 (+) Length   405 a.a.
NCBI ID   WP_034014663.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT417     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5089983..5101200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB734_RS23600 (HB734_23675) nadC 5091533..5092381 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB734_RS23610 (HB734_23685) - 5092585..5093049 (-) 465 WP_031630343.1 pilin -
  HB734_RS23615 (HB734_23690) pilB 5093279..5094979 (+) 1701 WP_003107297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB734_RS23620 (HB734_23695) pilC 5094983..5096200 (+) 1218 WP_034014663.1 type II secretion system F family protein Machinery gene
  HB734_RS23625 (HB734_23700) pilD 5096201..5097073 (+) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  HB734_RS23630 (HB734_23705) coaE 5097070..5097681 (+) 612 WP_023120878.1 dephospho-CoA kinase -
  HB734_RS23635 (HB734_23710) yacG 5097678..5097878 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  HB734_RS23640 (HB734_23715) - 5097915..5098124 (-) 210 WP_003094660.1 hypothetical protein -
  HB734_RS23645 (HB734_23720) - 5098230..5098919 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  HB734_RS23650 (HB734_23725) - 5098916..5099386 (-) 471 WP_003094664.1 hypothetical protein -
  HB734_RS23655 (HB734_23730) - 5099383..5099808 (-) 426 WP_016562341.1 GNAT family N-acetyltransferase -
  HB734_RS23660 (HB734_23735) - 5099941..5100570 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  HB734_RS23665 (HB734_23740) - 5100567..5101016 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44200.03 Da        Isoelectric Point: 9.8572

>NTDB_id=431651 HB734_RS23620 WP_034014663.1 5094983..5096200(+) (pilC) [Pseudomonas aeruginosa strain DVT417]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFESFGAELPAFTQMVINISTVLQEWWILVLLFLGGAGFLLK
YFYKRSEKFRNNTDRAVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVDKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=431651 HB734_RS23620 WP_034014663.1 5094983..5096200(+) (pilC) [Pseudomonas aeruginosa strain DVT417]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAATCCGTATTTGAAAGCTTCGGCGCAGAACTCCCCGCGTTCACCCAAATGG
TCATCAATATATCAACAGTTCTTCAAGAATGGTGGATTCTGGTTCTACTGTTTTTGGGCGGAGCCGGTTTCCTCCTTAAA
TATTTTTATAAACGTTCGGAGAAATTCAGAAACAACACTGATCGCGCAGTGCTAAAGCTGCCGATCGTCGGCGCTATCCT
CTACAAGTCCGCCGTGGCACGCTACGCGCGGACACTATCGACCACCTTCGCCGCCGGCGTACCACTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGAGATGCGGTGGACAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.012

100

0.79
  pilC Acinetobacter baylyi ADP1

60.784

100

0.612
  pilC Acinetobacter baumannii D1279779

60.396

99.753

0.602
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria meningitidis 44/76-A

46.02

99.259

0.457
  pilG Neisseria gonorrhoeae MS11

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

41.278

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

37.656

99.012

0.373