Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | DSUI_RS19580 | Genome accession | NC_016616 |
| Coordinates | 1516863..1517258 (+) | Length | 131 a.a. |
| NCBI ID | WP_014236553.1 | Uniprot ID | A0A5H2YB23 |
| Organism | Azospira oryzae PS | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1511863..1522258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSUI_RS07095 (Dsui_1455) | - | 1512727..1515093 (+) | 2367 | WP_014236551.1 | GspE/PulE family protein | - |
| DSUI_RS19255 | - | 1515104..1515808 (+) | 705 | WP_238526344.1 | GAF domain-containing protein | - |
| DSUI_RS19260 | - | 1515811..1516692 (+) | 882 | WP_238526345.1 | HD-GYP domain-containing protein | - |
| DSUI_RS19580 (Dsui_1457) | pilA/pilAI | 1516863..1517258 (+) | 396 | WP_014236553.1 | pilin | Machinery gene |
| DSUI_RS07110 (Dsui_1458) | sixA | 1517360..1517824 (-) | 465 | WP_043797885.1 | phosphohistidine phosphatase SixA | - |
| DSUI_RS07115 (Dsui_1459) | - | 1517853..1519376 (-) | 1524 | WP_014236555.1 | CYTH and CHAD domain-containing protein | - |
| DSUI_RS07120 (Dsui_1460) | - | 1519517..1520209 (-) | 693 | WP_014236556.1 | Crp/Fnr family transcriptional regulator | - |
| DSUI_RS07125 (Dsui_1461) | - | 1520429..1521598 (+) | 1170 | WP_014236557.1 | efflux RND transporter periplasmic adaptor subunit | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13362.44 Da Isoelectric Point: 7.6311
>NTDB_id=43143 DSUI_RS19580 WP_014236553.1 1516863..1517258(+) (pilA/pilAI) [Azospira oryzae PS]
MNKVQQGFTLIELMVVVAIIGILAAVALPAYSDYQAKGKIAAGLAEISAVRTAYEMIANDGGTPTEATIGLDTSKSGHCT
YTVDNTGISCALKNAPTKVNGLAIKLARAAGGAWSCDASALPTDMKPKGCS
MNKVQQGFTLIELMVVVAIIGILAAVALPAYSDYQAKGKIAAGLAEISAVRTAYEMIANDGGTPTEATIGLDTSKSGHCT
YTVDNTGISCALKNAPTKVNGLAIKLARAAGGAWSCDASALPTDMKPKGCS
Nucleotide
Download Length: 396 bp
>NTDB_id=43143 DSUI_RS19580 WP_014236553.1 1516863..1517258(+) (pilA/pilAI) [Azospira oryzae PS]
ATGAACAAGGTTCAGCAAGGTTTCACCCTGATCGAACTGATGGTGGTGGTTGCTATCATCGGTATCCTGGCCGCAGTTGC
TCTGCCGGCTTACTCCGACTACCAGGCCAAGGGTAAGATCGCCGCCGGTCTGGCAGAAATTTCTGCCGTCCGTACCGCCT
ATGAAATGATCGCCAACGATGGCGGCACCCCGACCGAAGCTACCATCGGGCTTGACACTTCCAAGAGCGGCCACTGTACC
TACACCGTGGACAACACCGGCATCTCCTGCGCCCTGAAGAATGCCCCGACCAAGGTCAATGGTCTGGCTATCAAGCTGGC
CCGGGCTGCCGGTGGTGCCTGGTCCTGCGACGCCAGCGCCCTGCCCACTGATATGAAGCCGAAGGGTTGCAGCTAA
ATGAACAAGGTTCAGCAAGGTTTCACCCTGATCGAACTGATGGTGGTGGTTGCTATCATCGGTATCCTGGCCGCAGTTGC
TCTGCCGGCTTACTCCGACTACCAGGCCAAGGGTAAGATCGCCGCCGGTCTGGCAGAAATTTCTGCCGTCCGTACCGCCT
ATGAAATGATCGCCAACGATGGCGGCACCCCGACCGAAGCTACCATCGGGCTTGACACTTCCAAGAGCGGCCACTGTACC
TACACCGTGGACAACACCGGCATCTCCTGCGCCCTGAAGAATGCCCCGACCAAGGTCAATGGTCTGGCTATCAAGCTGGC
CCGGGCTGCCGGTGGTGCCTGGTCCTGCGACGCCAGCGCCCTGCCCACTGATATGAAGCCGAAGGGTTGCAGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.652 |
100 |
0.481 |
| pilA | Acinetobacter baumannii strain A118 |
44.853 |
100 |
0.466 |
| pilA | Vibrio cholerae strain A1552 |
39.189 |
100 |
0.443 |
| pilA | Vibrio cholerae C6706 |
39.189 |
100 |
0.443 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.189 |
100 |
0.443 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.537 |
100 |
0.435 |
| pilA | Pseudomonas aeruginosa PAK |
37.584 |
100 |
0.427 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.681 |
100 |
0.397 |