Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HBH39_RS01535 Genome accession   NZ_CP050313
Coordinates   302997..304262 (-) Length   421 a.a.
NCBI ID   WP_167674964.1    Uniprot ID   A0A6G9QFL6
Organism   Shewanella aestuarii strain PN3F2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297997..309262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBH39_RS01505 (HBH39_01505) - 299040..299882 (+) 843 WP_167674952.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  HBH39_RS01510 (HBH39_01510) mutT 299924..300322 (-) 399 WP_167674954.1 8-oxo-dGTP diphosphatase MutT -
  HBH39_RS01515 (HBH39_01515) yacG 300343..300558 (-) 216 WP_167674957.1 DNA gyrase inhibitor YacG -
  HBH39_RS01520 (HBH39_01520) zapD 300606..301340 (-) 735 WP_167674958.1 cell division protein ZapD -
  HBH39_RS01525 (HBH39_01525) coaE 301333..301956 (-) 624 WP_167674960.1 dephospho-CoA kinase -
  HBH39_RS01530 (HBH39_01530) pilD 302049..302975 (-) 927 WP_167674962.1 A24 family peptidase Machinery gene
  HBH39_RS01535 (HBH39_01535) pilC 302997..304262 (-) 1266 WP_167674964.1 type II secretion system F family protein Machinery gene
  HBH39_RS01540 (HBH39_01540) pilB 304355..306063 (-) 1709 Protein_288 type IV-A pilus assembly ATPase PilB -
  HBH39_RS19925 (HBH39_01545) - 306128..306517 (-) 390 WP_167674966.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HBH39_RS01550 (HBH39_01550) nadC 307258..308136 (-) 879 WP_167674968.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HBH39_RS01555 (HBH39_01555) ampD 308501..309064 (+) 564 WP_167674970.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45918.07 Da        Isoelectric Point: 10.2597

>NTDB_id=431377 HBH39_RS01535 WP_167674964.1 302997..304262(-) (pilC) [Shewanella aestuarii strain PN3F2]
MSTAAVKRKPKTKKEVKHQPKVFTFEWKGVNRDGQKTAGELRGSSIAEIRSTLKAQGVTPKNVRKKATPLFKSEKKVTAM
DIAMFTRQVATMLAAGVPLVTTIELLGKGHEKAKVRELLGSILSDVQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLVVVPQFESIFKGFGAELPAFTQLIVNISRWLQASWY
FFAIAIIGGIWLFRRAHRSSQMVRDKVDETVLKIPAIGDILHKASMARFARTLATTFAAGVPLIDGLESAAGASGNAVYK
KALLKVRQEVMSGMQMNVALRTTGLFPDMLIQMVMIGEESGGLDDMLNKLANIYEMQVDDAVDGLSSLIEPIMMVVIGSL
VGGLIVGMYLPIFQMGNIVSS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=431377 HBH39_RS01535 WP_167674964.1 302997..304262(-) (pilC) [Shewanella aestuarii strain PN3F2]
ATGTCCACCGCGGCAGTAAAAAGAAAACCTAAAACAAAAAAAGAGGTAAAGCACCAACCCAAAGTGTTTACCTTTGAATG
GAAAGGGGTAAACCGTGATGGTCAGAAAACCGCGGGTGAACTTCGTGGTAGCTCCATCGCTGAAATCCGCAGCACCTTAA
AAGCCCAAGGGGTGACCCCGAAAAATGTCCGTAAAAAGGCGACACCACTTTTCAAGTCAGAAAAAAAAGTCACCGCGATG
GACATTGCCATGTTCACTCGCCAAGTGGCTACTATGCTTGCAGCTGGGGTTCCTTTAGTGACCACCATCGAGTTATTAGG
TAAAGGCCATGAAAAGGCGAAAGTACGTGAATTGCTTGGCAGTATTTTATCCGATGTGCAATCGGGTATTCCGCTATCAG
ATGCCTTAAGACCTCATAGGCAATATTTTGATGATTTGTATGTCGATTTAGTAGCCGCAGGTGAGCACTCTGGCTCGCTC
GATGCGGTATTTGATCGTATTGCAACCTATCGAGAAAAAGCAGAAGCACTTAAATCAAAAATAAAAAAAGCCATGTTTTA
TCCTGCTGCTGTAGTTGTCGTAGCGATAGCCGTTACCACACTATTATTGCTGGTTGTGGTGCCACAATTTGAAAGTATTT
TTAAGGGTTTTGGCGCTGAACTACCGGCCTTTACTCAATTAATTGTAAATATTTCCCGTTGGCTGCAAGCTTCTTGGTAT
TTTTTTGCAATTGCTATTATCGGTGGTATTTGGCTTTTTCGTCGAGCACATAGAAGCTCGCAAATGGTACGTGATAAAGT
CGATGAAACCGTGTTAAAAATTCCAGCTATCGGGGATATTTTGCACAAGGCATCTATGGCACGTTTCGCTAGAACATTAG
CTACCACCTTTGCCGCAGGTGTCCCGTTAATTGATGGCTTAGAGTCTGCTGCCGGTGCGTCCGGTAATGCCGTGTATAAA
AAAGCCTTACTTAAAGTGCGCCAAGAGGTGATGTCGGGCATGCAGATGAATGTGGCCTTGCGCACCACAGGCTTATTCCC
CGACATGCTGATTCAAATGGTAATGATAGGTGAAGAATCAGGCGGATTAGATGACATGCTTAACAAGTTAGCTAACATTT
ATGAAATGCAAGTCGATGATGCGGTTGATGGGCTTTCAAGCCTGATTGAACCCATAATGATGGTGGTCATCGGTAGCCTA
GTAGGCGGCTTAATTGTGGGGATGTACTTACCTATCTTCCAAATGGGTAATATTGTTAGCAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9QFL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.671

93.824

0.504
  pilC Acinetobacter baumannii D1279779

51.759

94.537

0.489
  pilC Acinetobacter baylyi ADP1

51.385

94.299

0.485
  pilC Legionella pneumophila strain ERS1305867

49.505

95.962

0.475
  pilC Vibrio cholerae strain A1552

46.851

94.299

0.442
  pilC Vibrio campbellii strain DS40M4

43.392

95.249

0.413
  pilG Neisseria meningitidis 44/76-A

40.547

95.487

0.387
  pilG Neisseria gonorrhoeae MS11

40.547

95.487

0.387