Detailed information NTG0431376

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HBH39_RS01530
• Genome accession: NZ_CP050313
• Coordinates: 302049..302975 (-)
• Length: 308 a.a.
• NCBI ID: WP_167674962.1
• Uniprot ID: A0A6G9QGN7
• Organism: Shewanella aestuarii strain PN3F2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 297049..307975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBH39_RS01500 (HBH39_01500)	-	297482..298978 (+)	1497	WP_167674950.1	AAA family ATPase	-
HBH39_RS01505 (HBH39_01505)	-	299040..299882 (+)	843	WP_167674952.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
HBH39_RS01510 (HBH39_01510)	mutT	299924..300322 (-)	399	WP_167674954.1	8-oxo-dGTP diphosphatase MutT	-
HBH39_RS01515 (HBH39_01515)	yacG	300343..300558 (-)	216	WP_167674957.1	DNA gyrase inhibitor YacG	-
HBH39_RS01520 (HBH39_01520)	zapD	300606..301340 (-)	735	WP_167674958.1	cell division protein ZapD	-
HBH39_RS01525 (HBH39_01525)	coaE	301333..301956 (-)	624	WP_167674960.1	dephospho-CoA kinase	-
HBH39_RS01530 (HBH39_01530)	pilD	302049..302975 (-)	927	WP_167674962.1	A24 family peptidase	Machinery gene
HBH39_RS01535 (HBH39_01535)	pilC	302997..304262 (-)	1266	WP_167674964.1	type II secretion system F family protein	Machinery gene
HBH39_RS01540 (HBH39_01540)	pilB	304355..306063 (-)	1709	Protein_288	type IV-A pilus assembly ATPase PilB	-
HBH39_RS19925 (HBH39_01545)	-	306128..306517 (-)	390	WP_167674966.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34114.62 Da
• Isoelectric Point: 7.2973

>NTDB_id=431376 HBH39_RS01530 WP_167674962.1 302049..302975(-) (pilD) [Shewanella aestuarii strain PN3F2]
MSEFISTFTASMSQNPWLFAAVSFVFAATIGSFLNVVIHRLPVMMKREWQAECNFYLNEYHPDIVEQVGEKRLNKPIDVF
PEKYNLVVPGSACPKCNANIKPWHNLPVLGWLMLKGKCANCQTSISARYPIIELLTGLLVATLAWHLGPSVQFLFAAILT
FFLVALTGIDLDEMLLPDQLTLPLLWLGLLINLQGVFISPTDAIIGAIAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAV
FGAWLGWQMLPLIILLSSLVGAVVGITMIITKKLHAGKPIPFGPYIAAAGWIALLWGNDIINWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=431376 HBH39_RS01530 WP_167674962.1 302049..302975(-) (pilD) [Shewanella aestuarii strain PN3F2]
ATGTCCGAATTTATCTCTACCTTTACCGCCAGCATGAGCCAAAACCCTTGGCTGTTTGCTGCCGTTAGTTTTGTGTTTGC
TGCCACCATTGGCAGCTTTTTAAATGTGGTAATTCATCGCTTACCTGTGATGATGAAACGTGAATGGCAAGCGGAATGTA
ACTTCTACTTAAACGAATATCATCCTGATATTGTCGAACAAGTGGGTGAAAAGCGCTTAAACAAACCTATAGATGTCTTT
CCTGAAAAATACAATCTAGTGGTGCCCGGCTCTGCCTGCCCAAAATGTAACGCTAACATTAAACCTTGGCATAACTTACC
GGTTTTAGGCTGGCTGATGCTGAAAGGCAAATGTGCCAATTGCCAAACCAGTATCTCTGCCCGCTACCCAATAATTGAGT
TACTCACCGGCTTATTGGTTGCTACCTTGGCATGGCACTTAGGCCCAAGCGTGCAGTTTTTGTTTGCTGCCATATTAACC
TTTTTTCTGGTGGCATTAACCGGTATCGATTTAGATGAAATGCTATTGCCCGATCAGCTCACCCTACCACTATTATGGCT
AGGCTTATTAATAAACCTGCAAGGTGTGTTTATCAGCCCCACTGATGCAATCATTGGTGCCATTGCCGGGTATTTAAGTT
TGTGGAGCGTGTTCTGGTTATTTAAGCTCGTCACTGGCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTTCTTGCTGTA
TTTGGCGCTTGGTTAGGCTGGCAAATGCTGCCGTTAATTATTTTGCTATCATCATTAGTTGGCGCGGTGGTGGGGATCAC
CATGATCATCACTAAAAAGCTTCATGCCGGTAAACCCATTCCATTTGGCCCATACATAGCCGCAGCAGGCTGGATTGCCT
TGTTATGGGGCAATGACATTATCAATTGGTATTTGGGCACACTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-146)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

3D structure

• AlphaFold DB: A0A6G9QGN7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.365	96.104	0.503
pilD	Vibrio campbellii strain DS40M4	51.701	95.455	0.494
pilD	Acinetobacter nosocomialis M2	49.346	99.351	0.49
pilD	Acinetobacter baumannii D1279779	49.346	99.351	0.49
pilD	Neisseria gonorrhoeae MS11	46.316	92.532	0.429