Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VEJY3_RS15675 Genome accession   NC_016613
Coordinates   3438040..3439149 (-) Length   369 a.a.
NCBI ID   WP_014233384.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3433040..3444149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS15645 (VEJY3_15280) hemF 3433493..3434410 (-) 918 WP_014233379.1 oxygen-dependent coproporphyrinogen oxidase -
  VEJY3_RS15650 (VEJY3_15285) - 3434459..3435016 (-) 558 WP_014233380.1 L-threonylcarbamoyladenylate synthase -
  VEJY3_RS15655 (VEJY3_15290) purE 3435222..3435707 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VEJY3_RS15660 (VEJY3_15295) - 3435712..3436845 (+) 1134 WP_014233381.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VEJY3_RS15665 (VEJY3_15300) - 3436906..3437475 (-) 570 WP_014233382.1 type I DNA topoisomerase -
  VEJY3_RS15670 (VEJY3_15305) - 3437558..3438037 (-) 480 WP_031779194.1 DUF494 family protein -
  VEJY3_RS15675 (VEJY3_15310) dprA 3438040..3439149 (-) 1110 WP_014233384.1 DNA-processing protein DprA Machinery gene
  VEJY3_RS15680 (VEJY3_15315) - 3439133..3440227 (-) 1095 WP_014233385.1 LysM peptidoglycan-binding domain-containing protein -
  VEJY3_RS15685 (VEJY3_15320) def 3440366..3440884 (+) 519 WP_014233386.1 peptide deformylase -
  VEJY3_RS15690 (VEJY3_15325) fmt 3440919..3441866 (+) 948 WP_014233387.1 methionyl-tRNA formyltransferase -
  VEJY3_RS15695 (VEJY3_15330) rsmB 3441949..3443232 (+) 1284 WP_014233388.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39947.76 Da        Isoelectric Point: 6.8794

>NTDB_id=43113 VEJY3_RS15675 WP_014233384.1 3438040..3439149(-) (dprA) [Vibrio sp. EJY3]
MKPLNENDLVAWLKLSCLPGIGGVKLNKLLAKDTPRNIINSSHEYLQRLGLSQKQLQAWTSADKEVEACLNWKEIASNHH
ILTLDDSLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAMVGSRNASVDGLQYARHFAADFVSNDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLAHIYPARHRGLAQRVAESGALISEFRPNAKPRPEHFPRRNRIISGLSLGVFVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=43113 VEJY3_RS15675 WP_014233384.1 3438040..3439149(-) (dprA) [Vibrio sp. EJY3]
ATGAAACCACTCAATGAGAATGACCTTGTTGCCTGGCTAAAGCTAAGTTGCTTGCCAGGCATAGGCGGGGTCAAGCTGAA
TAAGTTACTTGCTAAAGACACGCCTCGAAACATCATCAACTCCTCTCATGAATACCTGCAGCGCCTTGGACTAAGTCAGA
AGCAACTTCAGGCTTGGACGTCAGCCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGATCGCTTCGAACCACCAT
ATTCTGACTTTAGATGATTCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCGCCCCTGTTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATGGTGGGAAGCCGTAACGCGAGTGTTGACGGATTGCAGTACGCTC
GACACTTTGCTGCAGATTTCGTTAGTAATGATCTCATTGTAACCAGTGGATTAGCTTTGGGCATTGATGGTCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAAGACGATCGCGGTTCTTGGTTCTGGCTTAGCTCATATTTACCCAGCCCGGCACCG
TGGGTTGGCGCAGCGCGTCGCGGAGAGCGGTGCACTGATTTCAGAATTTCGCCCCAATGCGAAACCAAGGCCGGAACACT
TTCCACGTCGCAACCGAATCATCAGTGGGTTATCTCTGGGGGTGTTTGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCGCGTTATGCGCTTGAGCAAGGACGAGAAGTGTTTGCTCTGCCTGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACAAAAGATGTACTCGATGAAATACAGTCATTACTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCACGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.656

100

0.827
  dprA Vibrio cholerae strain A1552

57.143

100

0.575
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.455
  dprA Legionella pneumophila strain ERS1305867

46.729

86.992

0.407
  dprA Haemophilus influenzae Rd KW20

42.939

94.038

0.404
  dprA Neisseria meningitidis strain C311

35.516

100

0.382
  dprA Neisseria meningitidis MC58

35.516

100

0.382
  dprA Neisseria gonorrhoeae MS11

34.684

100

0.371
  dprA Neisseria gonorrhoeae strain FA1090

34.43

100

0.369

Multiple sequence alignment