Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HBA18_RS01120 Genome accession   NZ_CP050266
Coordinates   230464..232212 (+) Length   582 a.a.
NCBI ID   WP_241836804.1    Uniprot ID   -
Organism   Salinivibrio costicola strain M318     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 225464..237212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA18_RS01100 (HBA18_01100) pilM 227850..228764 (+) 915 WP_167313876.1 pilus assembly protein PilM -
  HBA18_RS01105 (HBA18_01105) - 228755..229333 (+) 579 WP_167313877.1 PilN domain-containing protein -
  HBA18_RS01110 (HBA18_01110) pilO 229330..229941 (+) 612 WP_069589871.1 type 4a pilus biogenesis protein PilO -
  HBA18_RS01115 (HBA18_01115) - 229938..230450 (+) 513 WP_069589873.1 pilus assembly protein PilP -
  HBA18_RS01120 (HBA18_01120) pilQ 230464..232212 (+) 1749 WP_241836804.1 type IV pilus secretin PilQ Machinery gene
  HBA18_RS01125 (HBA18_01125) aroK 232358..232876 (+) 519 WP_069589875.1 shikimate kinase AroK -
  HBA18_RS01130 (HBA18_01130) aroB 232898..233977 (+) 1080 WP_167313878.1 3-dehydroquinate synthase -
  HBA18_RS01135 (HBA18_01135) - 233989..235554 (+) 1566 WP_167313879.1 AAA family ATPase -
  HBA18_RS01140 (HBA18_01140) dam 235627..236448 (+) 822 WP_069589882.1 adenine-specific DNA-methyltransferase -
  HBA18_RS01145 (HBA18_01145) - 236462..236650 (-) 189 WP_069589884.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63407.03 Da        Isoelectric Point: 6.5385

>NTDB_id=430987 HBA18_RS01120 WP_241836804.1 230464..232212(+) (pilQ) [Salinivibrio costicola strain M318]
MMIRPYLSRTFSQSVRPVWLILLVLMFSLGSVQVAAKSMLTDIAVKRLDNGDAQVSLTFSDAAVTADFRQPIPQQVTLRL
PNVQLKQALLAVLDTRSRQTPVTEIETFQAPESARIVLRAEQAVDFDYQQQGKVLTIRVSAAKKAPSATALAQKGAAISI
NFQDIPVRTVLQLIAEQNDFNLVTSDSVQGNITMRIDGVPWQDVLDVILRVKGLDKRQRGQVMLVAPSAELMAQEKQALE
MRQQADALLPLTSEVLTVNYAKASDIAALIKGQGEGVSLLSPRGAVSLDERTNALIIKDNQKNLARIRTLVRHLDVPVKQ
VEIEARIVTVEEGSVDELGVRWGILNRNGSTSIGSSIESNLMWDRNMYNSDDEALTGSGNDSLPVDNFLNVNLAASNPAA
SSLALQVAKLGSDLLLDLELSALESENKAEIVSSPRLITTNKKAAYIEQGTELPYLEASSSGAVAVSFKKAVLSLTVTPQ
ITPENELVLDLKVTQDMPEKSVVAGKGEAMSISTKRINTQVLARNGETVVLGGIFQHTMINKETKVPLLGDIPLFGNLFK
HRLKDHAKRELLIFVTPKIVTG

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=430987 HBA18_RS01120 WP_241836804.1 230464..232212(+) (pilQ) [Salinivibrio costicola strain M318]
ATGATGATACGCCCTTACCTTTCCCGCACGTTCTCGCAAAGCGTTCGCCCAGTCTGGCTCATACTGCTGGTACTGATGTT
CAGCCTGGGTTCAGTGCAGGTTGCCGCAAAGAGTATGCTGACTGATATCGCAGTGAAGCGTCTAGATAATGGTGATGCTC
AGGTCTCGCTGACGTTTTCTGATGCCGCGGTAACGGCTGACTTTCGTCAACCCATCCCTCAGCAAGTCACGCTACGCTTG
CCGAATGTACAGCTAAAACAGGCATTACTTGCGGTTCTCGATACTCGCAGCCGTCAGACGCCAGTGACTGAGATTGAGAC
CTTTCAGGCCCCTGAGAGTGCTCGCATTGTACTGCGTGCTGAGCAGGCCGTGGATTTTGATTATCAGCAGCAAGGAAAGG
TGTTGACCATCCGCGTCTCTGCGGCAAAAAAAGCGCCTTCTGCGACGGCCTTAGCGCAAAAAGGGGCGGCGATCTCGATT
AACTTCCAAGACATTCCGGTCCGTACCGTGTTGCAGCTGATTGCTGAACAGAATGATTTTAACCTTGTGACCTCGGACTC
GGTACAAGGCAATATCACCATGCGCATTGATGGTGTGCCTTGGCAAGATGTATTGGATGTGATTTTGCGTGTGAAGGGAC
TGGATAAGCGCCAACGGGGACAAGTGATGCTCGTTGCTCCGAGCGCTGAGCTGATGGCACAAGAAAAGCAAGCACTCGAA
ATGCGTCAGCAGGCCGATGCCTTACTGCCTCTGACCTCAGAAGTACTCACGGTGAACTATGCCAAAGCCAGTGATATCGC
CGCCCTGATCAAAGGTCAAGGCGAAGGGGTCAGCTTACTGTCTCCTCGCGGGGCGGTGTCGCTGGATGAGCGCACCAATG
CATTGATCATTAAAGATAATCAAAAGAACTTAGCCCGTATTCGCACCTTGGTTCGCCACTTGGATGTGCCGGTGAAGCAA
GTTGAAATTGAAGCGCGGATTGTCACAGTTGAAGAGGGGTCTGTCGATGAGCTGGGAGTGCGCTGGGGGATTTTAAATCG
CAACGGTTCAACCAGTATAGGCTCTTCGATAGAAAGCAACCTGATGTGGGACCGTAACATGTACAATTCCGATGACGAGG
CATTAACCGGATCGGGCAATGATTCTCTGCCGGTGGACAATTTTTTGAATGTGAACTTGGCCGCCTCCAACCCTGCCGCG
TCAAGTCTGGCACTACAAGTGGCTAAATTGGGCAGTGATTTATTGCTGGATCTCGAGTTATCGGCGCTGGAAAGTGAAAA
CAAAGCAGAAATTGTATCGAGCCCGCGCTTAATCACCACCAATAAAAAAGCGGCATATATCGAGCAGGGGACCGAGTTAC
CTTATCTTGAAGCCTCTTCCAGCGGTGCTGTGGCGGTGTCGTTTAAAAAAGCAGTACTTAGCCTTACCGTGACGCCCCAA
ATTACCCCAGAGAATGAGTTAGTGCTGGATTTGAAAGTCACTCAAGATATGCCAGAGAAGTCGGTGGTGGCAGGTAAAGG
GGAGGCCATGTCGATCAGTACCAAGCGCATTAATACGCAGGTATTGGCGCGGAATGGTGAAACGGTGGTGCTGGGAGGGA
TCTTCCAACACACCATGATTAACAAAGAAACCAAGGTGCCATTACTCGGGGATATTCCGCTGTTTGGAAATCTGTTCAAA
CACCGTCTGAAAGATCATGCAAAACGCGAGCTTCTGATCTTTGTGACCCCTAAAATCGTCACAGGGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(254-320)

Bacterial type II and III secretion system protein (Secretin)

(422-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

55.451

91.409

0.507
  pilQ Vibrio cholerae strain A1552

57.198

88.316

0.505
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

57.198

88.316

0.505
  comQ Acinetobacter baylyi ADP1

38.648

99.141

0.383
  pilQ Acinetobacter baumannii strain A118

37.119

100

0.376
  pilQ Acinetobacter baumannii D1279779

37.119

100

0.376
  pilQ Legionella pneumophila strain Lp02

39.138

95.704

0.375
  pilQ Legionella pneumophila strain ERS1305867

39.138

95.704

0.375
  pilQ Pseudomonas aeruginosa PAK

37.943

96.907

0.368